Basic Information

Insect: Hypothenemus hampei
Gene Symbol: -
Assembly: GCA_013372445.1
Location: JABRWK010000048.1:542522-546734[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.8e-05 0.0015 18.8 1.4 1 23 201 223 201 223 0.98

2 12 0.00043 0.036 14.5 0.9 1 23 229 251 229 251 0.97

3 12 2.2e-05 0.0019 18.5 3.4 1 23 257 279 257 279 0.98

4 12 0.00034 0.029 14.8 3.1 3 23 293 313 291 313 0.95

5 12 6.4e-05 0.0054 17.1 0.4 2 23 320 341 319 341 0.97

6 12 4.4e-08 3.7e-06 27.0 2.3 1 23 347 369 347 369 0.98

7 12 3.3e-07 2.8e-05 24.3 0.1 1 23 375 397 375 397 0.98

8 12 2.3e-06 0.00019 21.6 0.3 1 23 403 425 403 425 0.98

9 12 1.1e-08 9.7e-07 28.9 0.5 1 23 431 453 431 453 0.98

10 12 4e-06 0.00034 20.8 1.1 1 23 459 481 459 481 0.98

11 12 0.0003 0.025 15.0 1.0 1 23 486 508 486 508 0.97

12 12 0.00044 0.037 14.4 0.5 1 23 523 546 523 546 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.8e-05	0.0015	18.8	1.4	1	23	201	223	201	223	0.98
2	12	0.00043	0.036	14.5	0.9	1	23	229	251	229	251	0.97
3	12	2.2e-05	0.0019	18.5	3.4	1	23	257	279	257	279	0.98
4	12	0.00034	0.029	14.8	3.1	3	23	293	313	291	313	0.95
5	12	6.4e-05	0.0054	17.1	0.4	2	23	320	341	319	341	0.97
6	12	4.4e-08	3.7e-06	27.0	2.3	1	23	347	369	347	369	0.98
7	12	3.3e-07	2.8e-05	24.3	0.1	1	23	375	397	375	397	0.98
8	12	2.3e-06	0.00019	21.6	0.3	1	23	403	425	403	425	0.98
9	12	1.1e-08	9.7e-07	28.9	0.5	1	23	431	453	431	453	0.98
10	12	4e-06	0.00034	20.8	1.1	1	23	459	481	459	481	0.98
11	12	0.0003	0.025	15.0	1.0	1	23	486	508	486	508	0.97
12	12	0.00044	0.037	14.4	0.5	1	23	523	546	523	546	0.94

Sequence Information

Coding Sequence: ATGGATATGACCGCCTATTTAACGGCGCCTcttcaattaaacaaaatatgcaGGACCTGTTTACTGGAAAAGGGAGACATGAGACCCCTATTTGGAGCTTGTCTAGATGAAATGCTGCAAAACTTTTCCGGTATTCAGgtCTCAGAAAATGATGGCTTTCCAAGTCTTATGTGTGTTCAGTGTGTATTACAGTGTAGCAGGGCTTATACCTTTAAGCAACTCTGTGAAAAGTCTGACGGTATTCTGAAACAATTCGTCAGTAGAGAATTTCAGGATATGTTGCATGACTACCAGGAACAGGAAAAGTCGAGAGATCAAGCCAAAAAAGAACTACAGGAACAGTTAACGTTTCGGTCCAATTCtcctgtaaaaatatttatgaatgaaCTTGATAAACAGGAACCAAATGCCTTCGATAGTTCACCTAAATCAGAGATGCCTGAAGAGTATTATACTGTGGTAGAGCAGCTAGAGAACAGTGACGATCAAGAAGATCCTCTAAATACTGAACTTAATGACgcattaaattacaaaattgatCTGAATACATTAAATGAGATAACGTCAATGAGGAtggaaagagagaaaaaaccAATGAAACATCAGTGCCCTAAATGTGATGCCCATTTTCCTTTACGCGTGGACTTGAAAGTACATATGATGACACATCCTAAAGATCTAGATCACATTTGTAAAGTCTGTAATAAGGCGTTCGCGGAAGCTCGCATCTTAAAACGACATCAAAAGATCCATATGGAACACAAACCACACCGATGCGATCAATGTGATATGTCGTTCGCTGAAAGTTCTAATTTAagtaaacacaaaaaaaaacacactgGAGAATTGAGAAATATCAAGGGCAAGCCGCATTTGTGTTCTGTTTGTGGACGGGCATTCAAATGGGCTTCCAGTTTGCATAAACACATGAAATATCATACAGGACACAAACTGCTCAGTTGTACATATTGTCCGAAACAATACGTTGAAGCTAggagtttaaaaattcatttgagaTCTCATACAGGCGAAAGGCCATTCGTATGCGATATTTGTCAGAAAAGCTTTACACAAAGttgtaatttagaaaaacatattaGGATTCATACGGGAGAACGTCCATATATTTGTCCCATTTGCAATAAAGGGTTTACTCAGTCCGGTTACGTAGCTATTCATATGCGTACGCATACAGGAGATCGACCGTATGTCTGTCAAACTTGCGGGCGTGCGTTTTCAGGCTCAAATACTCTTACGCTTCACCAAAGAATTCACACTGGAGAAAAGCCATATAGTTGCGAAATTTGTGGTAAAAACTTTAGCAGGCAAGAGACCCTCACGGTGCACATTCGATCACATACAGGCGATAAACCTCATGTGTGTAACATTTGTTCCAGAGGATTCACGTCTTCGGGACAATTATCTGGACATATGAAAACGCACAGCAATGAAAAACATTCATGTGAAGTTTGCGGCAAACTatttgCAACTATGAACGGTCTCAAAGCTCACTTTAAGAGTCACTTGCAGACTGCTGAAAAAGAGGAGATTGTGCAAACCGTACAGTACACGTGCAAGCTTTGTAATAAGAATTTTGAGGATGATACAGCTTTTAATACGCACATTTTGGATGTTCATGCAATTCAAGCTACTACTATACAAATTAAGGAAGAGGATTTGGAGAATATACAAACAATGCAAGTGGCGGAAATCATtacTGCCGACAATCAGACTATTCAGGTCCAAACAATCAGTCAAATCAATTAA
Protein Sequence: MDMTAYLTAPLQLNKICRTCLLEKGDMRPLFGACLDEMLQNFSGIQVSENDGFPSLMCVQCVLQCSRAYTFKQLCEKSDGILKQFVSREFQDMLHDYQEQEKSRDQAKKELQEQLTFRSNSPVKIFMNELDKQEPNAFDSSPKSEMPEEYYTVVEQLENSDDQEDPLNTELNDALNYKIDLNTLNEITSMRMEREKKPMKHQCPKCDAHFPLRVDLKVHMMTHPKDLDHICKVCNKAFAEARILKRHQKIHMEHKPHRCDQCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLHKHMKYHTGHKLLSCTYCPKQYVEARSLKIHLRSHTGERPFVCDICQKSFTQSCNLEKHIRIHTGERPYICPICNKGFTQSGYVAIHMRTHTGDRPYVCQTCGRAFSGSNTLTLHQRIHTGEKPYSCEICGKNFSRQETLTVHIRSHTGDKPHVCNICSRGFTSSGQLSGHMKTHSNEKHSCEVCGKLFATMNGLKAHFKSHLQTAEKEEIVQTVQYTCKLCNKNFEDDTAFNTHILDVHAIQATTIQIKEEDLENIQTMQVAEIITADNQTIQVQTISQIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -