Hham001164.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypothenemus hampei
Gene Symbol
ZNF236
Assembly
GCA_013372445.1
Location
JABRWK010000006.1:960717-967558[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0029 0.24 11.9 1.6 1 23 128 150 128 150 0.97
2 26 0.0054 0.46 11.0 0.1 1 23 156 179 156 179 0.94
3 26 0.00049 0.041 14.3 0.2 2 23 185 206 184 206 0.96
4 26 0.0011 0.096 13.1 0.7 1 23 212 234 212 234 0.98
5 26 0.023 2 9.0 2.4 2 23 248 269 247 269 0.96
6 26 4.2e-05 0.0036 17.6 1.8 2 23 293 314 292 314 0.96
7 26 1.4e-08 1.2e-06 28.6 0.9 1 23 320 342 320 342 0.99
8 26 4.6e-05 0.0039 17.5 1.6 1 23 348 371 348 371 0.96
9 26 0.0087 0.74 10.4 2.3 1 23 380 403 380 403 0.96
10 26 1.3e-05 0.0011 19.2 2.2 1 23 482 504 482 504 0.96
11 26 3.1e-05 0.0026 18.1 6.4 1 23 510 532 510 532 0.99
12 26 0.00038 0.033 14.6 0.4 6 23 543 560 543 560 0.99
13 26 0.029 2.5 8.7 1.8 3 23 571 591 569 591 0.93
14 26 0.00014 0.012 16.0 2.9 3 23 642 662 640 662 0.95
15 26 1.2e-05 0.001 19.3 2.4 1 23 668 690 668 690 0.98
16 26 8.8e-08 7.4e-06 26.1 0.9 1 23 696 718 696 718 0.98
17 26 0.052 4.4 7.9 3.9 1 23 724 747 724 747 0.95
18 26 7.8 6.6e+02 1.1 1.4 3 21 885 903 883 904 0.87
19 26 1.1 94 3.7 2.0 1 23 983 1005 983 1005 0.96
20 26 0.0036 0.31 11.6 5.1 3 23 1013 1033 1012 1033 0.98
21 26 7e-06 0.0006 20.1 4.0 1 23 1039 1061 1039 1061 0.98
22 26 5.9e-05 0.005 17.2 1.1 3 23 1071 1091 1069 1091 0.96
23 26 0.47 40 4.9 0.7 1 13 1097 1109 1097 1117 0.88
24 26 0.0022 0.18 12.3 0.4 2 23 1184 1206 1184 1206 0.94
25 26 0.0027 0.23 12.0 0.2 1 23 1212 1235 1212 1235 0.92
26 26 0.00059 0.05 14.0 0.6 1 23 1241 1264 1241 1264 0.98

Sequence Information

Coding Sequence
ATGGAGGGCCTACCAACACTTTCAGATAATTTTTCGGTTAAGCTCAACAATCCAGGGTTGCTACCTGTAGATATACTAGAAGAAGATCCTGCTGAATGTCCagtaatttacaaatttattgtcaaaCAATTAGACGATAATCGTGTACAATTGGTGTGTCGTGAAACAGAGGAATCTTTTACTATTAACATCTCAAATACTACGATAGAACCTTCTAATAAGGCATCAAATGCTGAAACTTCAGTTGACTGTGCTACAAataaagttattgaggttCCTGTTATTTGTGAGAGCttcaataataatgtaaaagcTATTGAAGAGAATACtcaaataacatttgaaaagtcttcagataaaatttcaataggtCTTTCtacattttcatgttttaaatgTGAAGAACAATTTAACAGTCTAGCTTCATTCAGGCAACATTTAAAGtggCATAAGACAGAAAAAGATTTCCTATGCCCAAAGTGTTCCGCTGGTTTTAAtgctgaaaataatttgaaaattcatatggTTACTAATCATCCCAGTAATTCAGATATGTGTCCGATTtgcaaagtattttttcaaagaaaagcCAGTTTAAGGTCTCACGTTTTGATTCATCAAGTTGAGGAATTATTTGTTTGTGATCATTGTCAGGgagaatttcaaaatgatGATGAATTACTAAAACACATGGAAACCCATGCTGTTGTTAAAAGACGAAAAGATTTAGATGATCAATTAACATGTCCCCACTGTagattgaaatttgaaactgTAAGACAATACAAAGAACATGTATCAAGGCATATTGaagtaaagaaaacaatatttaagggcaaaaaaaggaaaacgaaaATGAACTGGGATAATGGTTGCAAATGTCAATATTGTGGTAAACTTTTCCCTACGGAAAGTTCCCTAGATCGACATGAGAGGATACACACTGGAGAGAAACCATTTAAAtgCCAAATTTGTGGAAAATCTTTTAGCCAAAATGGGAGTCTTAACATTCATATGAACAAACACAGAGGGCTGACTCCTTTTCACTGTACACTGTGTCCAGCCAAATTCACCCAAAAAGGTAATTTGAGAGctcatttagaaaaaactcATTCCGCTCCAAAAGGTCATGAAATGTACAAATGCTCAGAGTGTacatgtattttcaaaaaagtgtcTTCACTGAATGGCCACGTCACTAAAGTTCATCTAAATCAACACGAAAATGGATCAGAAGAACGAACAGATATGGATCGAGCAATGGAGAGCATACAAGAACTACATAATGTATTAGGAAAATCTGTATTAAAGCGGGATGAGataagtCCCACATCATTTACACCAACTTTAGGAACATCTGTAgttaaaataacagaaaatcaCGCCAATGGTAGAGTAAGACGTTACTCATTGCATCAGAAACAAATTGGTGACATCCGATGGTACTTGTGCAATTATTGTAGAAGGAAATTTAAGAAGCCTTCCGATTTGATTAGACATTTTCGTGTTCATACTTTGGAAAAGCCGTTTAAAtgtCCAGAGTGCAATAGatgtttttccttaaaatgCACTTTAAATACTCACATGAAAGTACATAGCACTAGGCCAGAAACCATGACAGTATGTTGTGGTACCGTTTTCCGAAATTCAAGAGATTACAAAGCTCATCTTCGAACTCATATAGATCCCTCAAATGTAGCTAACAGTATTTGTCTCAAGTGTCACAAAACATTCACGTCATCACAAAAGGCGGAAGAGCATAAAGCTGTTCATCAGTCAGAAGTGCCAAGCACACATAACATTATCGAACCTCTCCTGAAACAACCATTATATCAAACTACTTAtgGTTCATTACAATTGAAACCAGTGAAATCGAAAGTTCCGAATACTGGCAATGAGTCCCCCTTAGAAAGACCACATTTGTGCAAAATTTGCAATGCTAGATTTACTCGATTAATGAGTTTACGTAGGCATATGCTTTATCATGCTAATGATAGGAAATACAAATGTACGATGTGTCCTAGgtCATTTGTGACGAAATACTCATTGTCAGATCACACAAAATATCATCAAAATGTGAAAAACTATTCATGCCAAACATGTGGAAAAAAGTTCGTCAACTCTTCTCTCTTAAAACGACATATGATTATTCATAATACAGTGAAACCATATGCATGTCCTTTTTGtaacaaacatttcaaaactGGAGCTCTTTGCCGCGTTCACATGAAAAATATGCATCCAACGAAACCCAGTGAGGTAACAAACTCCAATGATGAACGATCTGAAAATATGCCTACGATATCGGCGCCTCCTGAATGTGAAATACTTGCACCCGAGGCACCATCGGAAATCCAAATTTATCCAACAATTTTCGAATCCTCCCAAGAACAAACGAAACCAATGCCCGAATATCTTTTTCAACCTTCAGCTAATCAATCATCATTACCCATCGGTCAAATTCTTCTTAATATGGATGACATTTCCATGAACAACTCTCCAAACGATTTCAACCTCTATTCAGGAACATTCTTTGACGCCTCCAAACCAACAGACATGGTAGATCCAAATGAAGTACTCAATCCGTTGCCGCAACAGTTACCCACTACTACCACTCCCGTTAACGTTATGACCAGtgattacatattattttgtgttaattGTCATACCATGTTTGCCGATCTTCAAGTATTCGGCAAGCATCTATGTTCTGCTGAAATAGTAACCACTACTGATAATATGGATTTACTAGTTCCACCAGATAAGattttcgaTAATGCTGGATATACTGGTGCAGATCAACCTTTAAACGACGGTTACGTGGATAAGAATTTGGAAATTACAGTGACTCAACCAACggaaaatctaaatttagaCAAAATGAAGCAGTTTAGTTATAAGGATCCTTTACAAGCTGATGTACAAAAATTAGAGGAAGTAAAGCAATTTAATTGCAAGCAATGCAATTTTATCACACCTCTGGAAGAGAAGTTCCGCAAACATTTGTTTTCGCATCCGGAATTGAGTGAGAAGTTTTGCAAGttttgttgcaaaatttttagGAAAGCCTCAGATCTGAAACGTCACGTGCGCACTCATACTGGTGAGAGACCCTTCGAATGCGAAATTTGCCATAAgaaattttcactaaaatccACCTTAGAGTCGCATAAAAGAACCCATGAACTTCCCGGAacgtcaaaaattatttgtgaaGTATGCCACTCAAATTTTTCCACGAAATCCAGTCTCAAAGTTCACATGCTTCTTCACACTGGGGTGCGACCATACAATTGCAAATATTGCTTGCAAACTTTTCGGACTTCAGCTATTCGGAAAAcccatgaaaaaaattgtcagtCGGTGCAAAATTCAGCAAATCAGGACAAAAATGAAAGTATTACTATCCAGTGGCTGCCTCCAGAATGGTTGCAAGAAATTCCTCAGCCACAGTCGCAAGTTATTTTAACCACACCAGTGGTAGAAGGTGATTTAGGTCAACTAGAAATACCCGTAAAGCAGCCATCGGAAGTGAAAAGAAACAAAGCTCAGTGCGACATTTGCGATAAATTGTACGCCTCTAAAGATGTATTGAGGAAACATAAAAAAGCATTACATGGACAGAATAAGAAGTTTCCATGTATAAAGTGTGATAAAGGTTACGATCAGCTTGAGCAGCTGAACAAACACATCGCTAAGCTCCATTCGGGTTACAGACCCTATACGTGCCAATATTGTTCAAACAGTTTTGGTGAAGCAAACAGCTTACAAACCCACATAAAGCGAATTCATCAGAAATCATTAATGGGTgaagaaactaaaaatgcTCTTATGGGACTTCAATACGAACTGAAAATGAAAGAAGAGGATTTGTTCATATCTGAATCagttattttatag
Protein Sequence
MEGLPTLSDNFSVKLNNPGLLPVDILEEDPAECPVIYKFIVKQLDDNRVQLVCRETEESFTINISNTTIEPSNKASNAETSVDCATNKVIEVPVICESFNNNVKAIEENTQITFEKSSDKISIGLSTFSCFKCEEQFNSLASFRQHLKWHKTEKDFLCPKCSAGFNAENNLKIHMVTNHPSNSDMCPICKVFFQRKASLRSHVLIHQVEELFVCDHCQGEFQNDDELLKHMETHAVVKRRKDLDDQLTCPHCRLKFETVRQYKEHVSRHIEVKKTIFKGKKRKTKMNWDNGCKCQYCGKLFPTESSLDRHERIHTGEKPFKCQICGKSFSQNGSLNIHMNKHRGLTPFHCTLCPAKFTQKGNLRAHLEKTHSAPKGHEMYKCSECTCIFKKVSSLNGHVTKVHLNQHENGSEERTDMDRAMESIQELHNVLGKSVLKRDEISPTSFTPTLGTSVVKITENHANGRVRRYSLHQKQIGDIRWYLCNYCRRKFKKPSDLIRHFRVHTLEKPFKCPECNRCFSLKCTLNTHMKVHSTRPETMTVCCGTVFRNSRDYKAHLRTHIDPSNVANSICLKCHKTFTSSQKAEEHKAVHQSEVPSTHNIIEPLLKQPLYQTTYGSLQLKPVKSKVPNTGNESPLERPHLCKICNARFTRLMSLRRHMLYHANDRKYKCTMCPRSFVTKYSLSDHTKYHQNVKNYSCQTCGKKFVNSSLLKRHMIIHNTVKPYACPFCNKHFKTGALCRVHMKNMHPTKPSEVTNSNDERSENMPTISAPPECEILAPEAPSEIQIYPTIFESSQEQTKPMPEYLFQPSANQSSLPIGQILLNMDDISMNNSPNDFNLYSGTFFDASKPTDMVDPNEVLNPLPQQLPTTTTPVNVMTSDYILFCVNCHTMFADLQVFGKHLCSAEIVTTTDNMDLLVPPDKIFDNAGYTGADQPLNDGYVDKNLEITVTQPTENLNLDKMKQFSYKDPLQADVQKLEEVKQFNCKQCNFITPLEEKFRKHLFSHPELSEKFCKFCCKIFRKASDLKRHVRTHTGERPFECEICHKKFSLKSTLESHKRTHELPGTSKIICEVCHSNFSTKSSLKVHMLLHTGVRPYNCKYCLQTFRTSAIRKTHEKNCQSVQNSANQDKNESITIQWLPPEWLQEIPQPQSQVILTTPVVEGDLGQLEIPVKQPSEVKRNKAQCDICDKLYASKDVLRKHKKALHGQNKKFPCIKCDKGYDQLEQLNKHIAKLHSGYRPYTCQYCSNSFGEANSLQTHIKRIHQKSLMGEETKNALMGLQYELKMKEEDLFISESVIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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