Hham015162.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000141.1:225441-230102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00082 0.07 13.6 3.7 1 23 426 448 426 448 0.98 2 18 0.00011 0.0092 16.4 1.8 1 20 454 473 454 476 0.94 3 18 9.5e-06 0.00081 19.7 1.5 1 23 482 504 482 504 0.98 4 18 0.00012 0.01 16.2 4.0 3 21 512 530 510 532 0.95 5 18 9.5e-06 0.00081 19.7 4.7 1 23 538 560 538 560 0.99 6 18 1.9e-05 0.0016 18.7 5.3 1 23 566 588 566 588 0.97 7 18 4.6e-06 0.00039 20.7 7.6 1 23 594 616 594 616 0.97 8 18 1.1e-07 9e-06 25.8 1.9 1 23 622 644 622 644 0.98 9 18 5.6e-05 0.0047 17.3 6.7 1 23 650 672 650 672 0.97 10 18 3.4e-05 0.0029 17.9 7.6 1 23 678 700 678 700 0.98 11 18 7.9e-08 6.7e-06 26.2 3.1 1 23 706 728 706 728 0.98 12 18 1.6e-06 0.00013 22.1 7.8 1 23 734 756 734 756 0.98 13 18 3.8e-05 0.0032 17.8 8.2 1 23 762 784 762 784 0.98 14 18 1.3e-05 0.0011 19.2 7.7 1 23 790 812 790 812 0.98 15 18 1.8e-05 0.0015 18.8 6.7 1 23 818 840 818 840 0.97 16 18 2e-05 0.0017 18.7 0.8 1 23 846 868 846 868 0.98 17 18 0.068 5.7 7.6 5.0 1 23 878 900 878 900 0.98 18 18 4.1e-07 3.5e-05 24.0 0.5 1 23 906 928 906 928 0.98
Sequence Information
- Coding Sequence
- atgaataatgaaaatcaGAATGCCATTCAGGGCACAACACACAGCACCACTCAGAACAATGATatatcaGTACAAGCGAGACAAGCAAGCACGACAATTCCTACTGACCTAAGAGTCAATACTACAGCCCTAAATGCAGTGGCCTTGAGCAGTGTGGCCAAATACTGGGTGTTGACTAACCTACTGCCCGGTCCAATTCCTCAAGTCTCAGTTTATGGACTTTCTGGCACTGGAAGGGAAAATCAAGGCAAATTGCCTCAAGACGCTGTATTAGGACAACATGCCGCAGGACTCCTGCAAGCGGATCCTCAGCTATTATTGCAGCAGCATGCCCAAATACCTGTGAGCATTGCCACGGCCCAGGGAGCAATTGGAATTCCTGCTGGCGCGATTCATTTAGATGCCACACATCCAATTAACTCTCATCAGCAACAGCAACCAGTTGAACATGGACAGTTAAATAGAGATGTCAGAATAAACAGCTCCCAATCCcaacaacagcagcaacaAAACCATAACCAACAGAATTTAGTCCAAGTCCAAGTCAATCAAGACAATATGGTCTCAGTTATTGACGAAAACAATGACaaacaaaaagatattttaaatgcccAATTACAGGCCGCACATATGCAATTGAACGAGTCACAGATTAACACTCAGGTGTTGGCTGTACAGCAATTACAGCAGCTTCAAGCCCAACAAGTGCAACAAGTTTTAGATAATGTTATGGTTCGCATGGAAAACTCGTCTATGGAACACAATCAGCAGCAACAGTctcaacaacagcaacaacatgGTGAACAACagcaaataaatgaaaacattgaCATTGTTAAAGAGGAAAAGACCAAGTTTGTTGGTAATAATAGCCAAATGGGACTTTTACAAGAGCTCAAAGGGAGTGTGATGGATGTTAGGACTTCTGATGGAAGCATTGtgaaaatacAAACGAACATGCAGGAACAGGAACTGGCTAAGACATTAGGAGTTGAAATGGTTCAGAATATGTACAAAGTCAATGTAGACGATTTAAATCAACTGCTTGCTTACCATGAAATCTTTGGTAAACTTCAAAACCCTGgaGAAGTATCTAATGCTTCCAGCCAGACTCTTTCCGCCTCTGGTTCAaccaataataatacaaaCGTCAATATGCAACCCTCCAATCCTAATAACGTACAAACCATTATAACAAAAGATGAACATGATCATCAGAACCCATCCACTATACAACATACAGAAAATAACACTGCTTCTGTTATAACGGGCAATCATCAATGCGATTTATGTTTGAAATCCTTTCAATATCGCTATCAGTTGATTGTACATAGACGATATCACAGTGAAAAAAAGCCATTCACTTGTCAGGTGTGCGGTAAAGCTTTTCCAAATAGTCAGGAATTGTCGCGTCATGGCAAATGTCATTTGGGAGGCAGCATGTTCACCTGCAcaatttgttttcatgttttcGCCAATGCACCCACTCTGGAACGTCATATGAAACGACATTCAGCCGATAAACCTTACGGATGTACCACATGTGGCAAGACTTTTGCCAGAAAAGAGCATTTGGATAGCCACATGAGATGCCATACTGGAGATACTCCTTATCGTTGTCAGTTTTGCGGCAAAAATTTTACACGTAAAGAACACATGGTAAATCACGTGAGAAAACACACAGGAGAAACTCCGCATCGATGcgaaatttgcaaaaagtCTTTTACTCGCAAAGAACATTTCATGAATCACGTGATGTGGCATACGGGTGAAACGCCGCACTGTTGTACGATTTGTGGCAAGAAATATACTAGAAAAGAACACTTAGCTAACCACATGAGAAGTCACACGAATGACACGCCCTTTAGATGTGAGATTTGTGGCAAAGCATTCACTAGAAAAGAACATTTCACTAATCATATTATGTGGCACACGGGAGAAACTCCTCATCGATGcgatttttgttcaaaaacgTTCACTAGGAAGGAGCATTTATTGAATCACGTGCGACAACATACCGGAGAATCTCCGCACAAATGTATGTTTTGTAATAAGTCGTTTACAAGGAAAGAACATCTCACAAATCATGTGAGACAACACACGGGTGAAACACCCTTTAAATGTACTTATTGTCCGAAAGCATTCACTAGAAAAGACCACTTGGTTAATCACATTCGACAACATACAGGAGAGTCACCGCACAAGTGCACTTACTGTACAAAATCTTTTACCAGAAAAGAgcatttaaataatcatattaGACAGCATACAGGGGAGTCGCCACACAAGTGTCATTTTTGCGCCAAGTCTTTTACTAGAAAAGAGCATTTGACCAATCACGTGAGGATTCATACAGGCGAGTCTCCCCATAGATGTGAGTTTTGCCAAAAAACGTTTACCAGAAAGGAGCATTTAACCAACCATTTGAGGCAACACACAGGCGAGACTCCACACTGTTGTAATGTTTGTTCAAAACCCTTTACCAGAAAGGAACATTTATTGATTCATATGCGGTCACATACTGGAGAAAGGCCTTTTACTTGTAACGAGTGTGGAAAATCCTTTCCTcttaaagGAAACCTACTGTTCCATCAAAGGTCCCATAATAAAGGCCAGCAAGCTGAGAGGCCTTTTCGTTGCGACTTATGCGAAAAAGACTTTATGTGCAAAGGCCACTTGGTCTCCCACAGACGATCTCATGGTGGTGAGAAACCTTTCAATTGTTCAGAATGTGGCAAATCCTTTGcggaaaaaggaaatttactgAGACATGCAAGGAAACACATTCTAGATCGCGAAAAAGCCGAACAAGCTCAAATGCAtcaacaacagcagcagcagcagcaacagtCACAACAGCAACAAAATCAAAACGGAAACATGCAACAACAAATGGCACCGCCAGCTCCTCCACCGCAGCCGCCCAATGGGGGCTTAGTTCAAGGCGGTCATATGATCCATAACGCCAATCATCATTCGGTCGTGGTTCCTACCAATGCAAACGTGTTAGCCACGTACTAG
- Protein Sequence
- MNNENQNAIQGTTHSTTQNNDISVQARQASTTIPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLSGTGRENQGKLPQDAVLGQHAAGLLQADPQLLLQQHAQIPVSIATAQGAIGIPAGAIHLDATHPINSHQQQQPVEHGQLNRDVRINSSQSQQQQQQNHNQQNLVQVQVNQDNMVSVIDENNDKQKDILNAQLQAAHMQLNESQINTQVLAVQQLQQLQAQQVQQVLDNVMVRMENSSMEHNQQQQSQQQQQHGEQQQINENIDIVKEEKTKFVGNNSQMGLLQELKGSVMDVRTSDGSIVKIQTNMQEQELAKTLGVEMVQNMYKVNVDDLNQLLAYHEIFGKLQNPGEVSNASSQTLSASGSTNNNTNVNMQPSNPNNVQTIITKDEHDHQNPSTIQHTENNTASVITGNHQCDLCLKSFQYRYQLIVHRRYHSEKKPFTCQVCGKAFPNSQELSRHGKCHLGGSMFTCTICFHVFANAPTLERHMKRHSADKPYGCTTCGKTFARKEHLDSHMRCHTGDTPYRCQFCGKNFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHCCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCMFCNKSFTRKEHLTNHVRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLNNHIRQHTGESPHKCHFCAKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLIHMRSHTGERPFTCNECGKSFPLKGNLLFHQRSHNKGQQAERPFRCDLCEKDFMCKGHLVSHRRSHGGEKPFNCSECGKSFAEKGNLLRHARKHILDREKAEQAQMHQQQQQQQQQSQQQQNQNGNMQQQMAPPAPPPQPPNGGLVQGGHMIHNANHHSVVVPTNANVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444375;
- 90% Identity
- -
- 80% Identity
- -