Hham009638.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypothenemus hampei
Gene Symbol
-
Assembly
GCA_013372445.1
Location
JABRWK010000007.1:427396-438058[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 48 0.47 40 4.9 0.5 3 23 26 43 24 43 0.74
2 48 7.3e-05 0.0062 16.9 0.4 1 23 45 67 45 67 0.98
3 48 0.0027 0.23 12.0 2.6 2 23 74 95 73 95 0.95
4 48 1.2 99 3.7 0.4 1 14 99 112 99 113 0.86
5 48 2.3e-05 0.0019 18.5 0.2 1 23 129 151 129 151 0.98
6 48 0.00012 0.01 16.2 1.3 1 23 157 180 157 180 0.97
7 48 1.1e-05 0.0009 19.5 0.5 1 23 191 214 191 214 0.96
8 48 0.00014 0.012 16.0 0.2 2 23 223 244 222 244 0.97
9 48 3.6e-05 0.0031 17.9 5.5 1 23 250 272 250 272 0.98
10 48 0.001 0.088 13.3 4.3 2 23 363 384 362 384 0.96
11 48 0.46 39 4.9 0.6 1 23 407 429 407 429 0.98
12 48 0.94 79 4.0 0.1 1 23 433 455 433 455 0.96
13 48 0.033 2.8 8.5 0.1 1 23 461 484 461 484 0.97
14 48 0.002 0.17 12.4 3.1 1 19 490 508 490 512 0.90
15 48 0.0068 0.58 10.7 1.0 3 23 520 541 518 541 0.96
16 48 0.64 55 4.5 0.9 2 23 623 645 622 645 0.92
17 48 0.015 1.3 9.6 1.0 1 23 667 690 667 690 0.97
18 48 0.0047 0.4 11.2 5.4 1 23 694 716 694 716 0.99
19 48 0.044 3.7 8.1 3.6 3 23 724 745 722 745 0.96
20 48 0.016 1.3 9.6 0.7 1 23 751 773 751 773 0.88
21 48 0.015 1.3 9.6 5.4 1 23 779 801 779 802 0.95
22 48 0.0081 0.68 10.5 0.8 2 23 814 836 813 836 0.95
23 48 0.00017 0.014 15.8 0.1 2 21 865 884 864 885 0.94
24 48 0.0013 0.11 12.9 0.2 1 20 944 963 944 965 0.94
25 48 0.2 17 6.1 0.1 1 23 996 1019 996 1019 0.97
26 48 2 1.7e+02 2.9 0.7 2 19 1023 1040 1022 1044 0.79
27 48 1.6 1.4e+02 3.2 1.1 2 23 1051 1073 1050 1073 0.94
28 48 4.3e-06 0.00037 20.8 1.7 1 23 1088 1111 1088 1111 0.97
29 48 4.9e-05 0.0042 17.4 1.2 3 23 1142 1163 1141 1163 0.96
30 48 0.00012 0.0098 16.3 1.7 1 23 1203 1225 1203 1225 0.97
31 48 0.97 83 3.9 0.4 1 23 1247 1269 1247 1269 0.97
32 48 0.014 1.2 9.7 1.6 2 23 1274 1295 1273 1295 0.96
33 48 6.7 5.7e+02 1.3 0.9 2 21 1302 1323 1301 1326 0.62
34 48 0.0017 0.14 12.6 6.6 1 23 1332 1354 1332 1354 0.98
35 48 0.048 4.1 8.0 1.7 1 23 1360 1383 1360 1383 0.91
36 48 0.014 1.2 9.7 0.1 2 21 1395 1414 1395 1415 0.94
37 48 0.00027 0.023 15.1 0.3 1 23 1432 1454 1432 1454 0.95
38 48 2.7e-06 0.00023 21.4 0.6 1 23 1460 1482 1460 1482 0.98
39 48 0.00011 0.0098 16.3 2.2 1 23 1488 1510 1488 1510 0.98
40 48 0.0077 0.66 10.5 1.0 1 19 1516 1534 1516 1537 0.88
41 48 0.077 6.6 7.4 0.2 1 23 1593 1616 1593 1616 0.97
42 48 0.69 59 4.4 0.1 1 23 1620 1642 1620 1642 0.95
43 48 0.94 80 4.0 0.9 1 23 1648 1673 1648 1673 0.74
44 48 0.013 1.1 9.8 2.9 1 20 1679 1698 1679 1701 0.88
45 48 5.3e-05 0.0045 17.3 0.3 1 23 1756 1778 1756 1778 0.95
46 48 2.7e-06 0.00023 21.4 1.1 1 23 1784 1806 1784 1806 0.98
47 48 0.00026 0.022 15.2 3.0 1 23 1812 1834 1812 1834 0.99
48 48 0.00039 0.034 14.6 2.4 1 21 1840 1860 1840 1861 0.96

Sequence Information

Coding Sequence
ATGCCTCGAAGactCTTCATTGTAATACCATTGCAAACACTTCGAAAACCAATTAAAACTCCCTCTAAAGAGCTGTGCAATATTTGTGGTAGAACCGTGCGGAACCTTAAAAAGCACTTGGACCTACATCAATTCGAATGTCCAGAGTGTCTGACGACCTTTAAATCCCTTCAACTATTACAGGACCATCAGAAGATTCATCTCAAAAACAATCAGCTCTCCTGTACTTATTGTCCCTTAAAATTTTCGACGAACTTTGATCTATGCCTCCATGTCTACAAACATGTTAAACGATACATTTGTCCTATTTGTGGCTTCAAATCCTCCAACAAAACCTCCGGTTCAATCAAATTTCACATTCGCAgacatgaaaataatttcaattttagatgtAACATTTGCGGTAAGGGATTTGTAGGTTCCAAAAAGCTCCAAGACCATTTGGAGATCCACACTGGTGTTCCAAAATACGAATGCGAAGTGTGCAGCAAGAAATTCAccgtaaaaaattatttaaatttacatgttAGGTATAATCACAAGAAGGAAGTGTTTGGTATTGAGGAAGGTTTTCAGTGCGAGGTTTGTGGCCggaaatttacttttgaaaagaGCCTAATTCGGCATTTAAGTGTCATCCATAAAATTGGCAAGAATTTGCAAGTCGAGTGTCAAATTTGTGGAAAACTTTTAGccaacaatttcaatttgaagatGCATATGAAAGTACATACTGgcgaaaaagatttttcctgTGAAAAGTGTGGAAAAGGGTTTTCTCATTTGAAACACGTAAAGCGACATCAGAAAGTCCATTTAAAAGACAATACCTTGTTGTCTAAAAACCAAGTGAACTCTGAAGAAAACTTTCCgTTGCTAGTAGacattaaagaagaaaatgtatCGCACTATGAAGAGAATTTTCCAAAGAAAAGTAaacgattgaaaaataaacgtgCAGCAAGAAAACTTGATGTCGATGTCAAATGGACGCCACGCGAAGAGAAACGCAGCCGTTTAAgggtgaaaaaagaaaaaccagaCACGCCCCAAAAACTTCCCAAGAATCAAAAAGCGAACATGTGGACGtgcaaatattgttttaaaacattttcgtCGCGTAAAGAAATGTTTCAGCATCGCAAACAACATTCGGAAAACGAAAAGTATTCGTCTTCGGAAGCTATTAAGTACTACTATGATGAATCTCATGAAATTTACATCTGTAATAATTGCTCAGCAGAATGTCAGGATCTGAATGAAATCGAGAAACATGTGCAAACTCACGAGAAAAAGTTCAATTGCCCGGTATGTAAAGAGGACCTTTTTGGGCCCATTAATTATTCGGTGCACGTGCAAAAGCATCGCGACGACAAAATGTTCCCATGTCCTTGGTGTCAATATATGTCGCAAAAGAAAGAAGCGATGCAAGTTCATATTAATCGTCTCCATTTGCAACTCTACGACTTTCAATGCACCAAGTGTGGAAAATGCTTCAACGATGCGTTGAGTTTCAAGGAGCACGACAATGTCCATTTGAATCTCAAGCCTTTTGGTTGTGTGGTATGcaacaagaatttttattattcgcgATATTTGCTGTCGCACCAATTGCGCACTCATACGGTGCGCGTTATGGATCCAGAATCCAAAACCCAattttcttgGACCTACGAAGATCATCTCCAAGTGGAGATGGAGGTTAGCGATGCCGAGTATGAACCCGTTTcggaaaagttaaaaattaaaaccgaaTCGAAAACTACGAATCacgaaaacaaaatgaaacgTACCAGGAAATCACCtgcgaaaacaaagaaaacgaACGACACCTACAACAAACGGAAACAAGAACATAAATTGTGGACGTGTCGGCGGTGTCTTCAAGAGTTTAATTCTCGGAAAGGACTCACTGAACACTCGAAATTGCTTCATCAGGACGGAATGATGAACAATTCCGACGAACATACTTTTAAGCACGATGAAGAACAAGACTTGTACTCATGCAACACATGTTCAGTTGAATTTCATACTAAAGAAGAAGTGGAACAGCATATTTCCAAAGTGCACGAAGAGTTTTACTCTTGCGAGGTGTGCAATCACACCTGCAAAAAGGCGTATACTTTTGCATTGCATATGAAAACTCATTCAAACGATGATTTGATGGCGTGTCCTCTATGCAGCTATAGTACTCACAGAAAGACATGTCTTCAAACTCATATAAATCGGGTGCATTATCACAAATTCTATTATACTTGTACCACTTGCGGTAAGGGCTTTAATGATTCGGTTATCTTCAAAGAACACAACAACGAACATTTAGGAATCAAGCCTTTTACCTGTGTTGTATGTGAGAAAACCTTCTGTTACTCTCGttacaTGAATATTCATCAAGTAAGGCATCATACAGTATATATCGAAGGCATCTTACACAAAACTCAATGTAGCATTTGTATGAAGGTCTTCTCCAAAGTGGAGACCCTGTTAAAACACATTACCTCCAAACATAAGAACGATGATGAAAAGAACGAAAAACGACACCTgCGTGTCCGTAAATTATCAGCTGCTAAAGCCTTGACCGGAATCTCTTGGCAATGTTCAGATtgtggaagaaaattttcgagCCTGCTAACTCTCACCAGTCATATGGAAGTTGGATGTTTCAATCTCAAAGAaccaaaagaagaaaaagaagaattagcTCCGATAAGTCTCCTCAGTAAACTTCCAGGTATCAGTGCGAAAATAGTAAAGAAACCTTCAAAGACAACAGATCGTCGTCAAGAGTCTATTAAACCGAAGTCTTCTACAAACTCCAACAAGTTCTTCTTCATGTGTCCTAAGTGTcctcaaattttttcttcacagGAACTACTGGACAAACATAAAGGAAAATGTTTGTCTCGTGGACAAATTTTCCAGCGAAAATCATCTTCAGATTCTAATGACATGGAACCGTATCACTTTGATCGTTTTAGTAACGTATATATATGCGCCAAATGCTTAGAAGAGTTCGACTTCAAGAGCGGTATACTCGAACATTTGAGGAGTGCACATAAGTCGGTGAAATGCGAACATTGCCATATGGAATTTGATTCTCTTATCGAGTATGGGTATCACAGCGCTGAACATGACCCCACGCAGGAAATTAGTTGTCCCTGTTGCGACTTTACCACAGACAACAAAACCAAATTCGCTTTGCACATAGAGACAGATCATCCGTATGGTAATACCAATTTACTTTCTAAGAAAACAGCTAATTTCACGTGTGTCGTCTGCggaaaaaagtttaacaacAAACAGAAATTGACGGCACATCAAAGAAATTCTCATAAAGCGGCAGTGGACGTGGAACCATCCATGGGAGCCCGTTTTAAAGATGTGACACCTGCCAAATCTGGACAATACGTACAACCTATGCTCTGTGACACGtgtggaaaaaatttcaactctAAATATCGTTTGGAAAGACATCAACGAGCCATGCATGAAGGgtTCCGACGTCGTCGTCAAAGCCGCACCAAGTGCAAATCTTCAGGCGATCCCGAGGATGATTTGAACCTTCTCTCGCGTCTTAAGAAACGTGTCAAAAAACTGACATCAAATTTCGTGTGCAAATATTGCCAAGAAACATTTAATACGTTAAAACTGTTAAAGCAACACAAGGAAATTCACAAACCATTTACAGCgtatgaagaagaagaacccAATTACAAATTCGATATGCTTCAAGATCTATTTGTATGTCTTGTATGTTCAGCAGAATTCCAAGAAGAATGCGAAgcaaaaaatcacataaacaCCCACAAATCAACAATTTCCTGTAACAATTGCGAAGAAACTTTTAAGAATCATTTTGATCTAGGAGTGCATTCTATGAAACATGATCCAGATGGCAAAATGAGGTGTCCTCTATGTTCTTACGTGTCCTCCAATTCCAACCTTTACAGTTTCAAAGCGCATATGAATTTTGTCCATTTGAAAAGATTTCCGTTTTACTGCAAGGAATGCACCAAAGGCTTCAAACACTTTAAAACCTTTCAAGAGCATCAGAACACACATGCAGGTAAAAAGCCTTATATCTGTATAGTGTGCTCAAAAGGATTTACATATCAAAAGTACCTTCACGTGCACCAAGTACGAAATCACCAGGTGGGTACAACTGGGAAACGCATTGAAAACGAATGTAGCACGTGCAATCGTTATTTCTACAAGCCTGAATCTCTGGAAGAACATTTACAAATCTGTTATAAGCGCAAAAAGAAGCCGAAAAGCGAGACGCCTGTCAAAGCCTTTCTATGCGATTCCTGTGGACAGACTTTCACGGAGAAAGCGAAACTGTTGGAACATCTGCGAGTTCACAAAGGAGATCTGCCATTTGTATGTACGTGGTGCGGCAAAAGATTTCCTGTTAAGAGCTATTTAAAGACTCATGAGAGAGTTCATACCGGGGAGAAGCCATATTCTTGTGAGTTTTGCGGAAAACGATTTGCTCAACATGCACCGTTTAgAGTCCATCGAAGAATGCACACGGGAGAACGACCGTATGTCTGTGATTTCTGCGGAAAAGGCTTTACCACCAATCAGGGcttgaaatttcataaaaaaaattgtcctgACAATCAGTACATTAGgttgaaaattaaacgttCTAAGCTTAGAAAACCTAAAATTACGTCTCAAGCTGTTCAGAGGCAACATCGAAAATCACACAAGAATATCACAAGCTTTGAAACAGAGGATCCAACATACAAATTCGACTCAATTCAGGAACTCTACGTGTGCGAAACGTGTTCTGCTGAGTTCCAAAAACTTTCGGAAGTCCAAGAGCATCTGGATACCTTCCACAAGGAGAAGTTCAAATGTCAAGAGTGTGCGGCTATTTTCCAAACATCTATAGATCTAGGAATGCACTCTATTAAACACAGCAAAGACAAGAAGTTCAAGTGTCCGTTGTGCAACTACGTTAGTCGAGGAAGCAATCCATACAATTTCAAATCACACTTAACTTACATGCACCTAAAGAAGTTTCCTTATTATTGCCAGGATTGTGGAAAAGGGTTCAAACAGTTGAAAACGATCCAAGATCATTGTAATCTTCATAAAGGTCAGAAACCTTACAAATGCATAGTATGTGCTAAGTCGTTTACCtgcgaaaaatatttaaatagtcaTCAGGTACGCAATCACCATGTTAGTTCCGAGGGTGAAAAGAGCAATCAAAAACATCACGTGTCCAGAAAGACTTTTAAGAAACCTAATTCGTTTCTTTGTGACACTTGTGGTCAAggtttcattgaaaaatcaaaattacttaaaCACATACGGGTTCACAACGGAGATTTGCCATTTGTTTGTAACTGGTGCAATAAGAGATTTCCCCAAaaagattatttgaaaactcaCGAGAGAGTTCATACCGGAGAGAAACCTTACAAATGTCAGTTTTGTGGAAAATCTTTTGGATTTCATGCTCCCTTCAGAGTGCACTTGCGTACCCACACGGGCGAGCGTCCTTACAAGTGTCACTTTTGTTCCAAGGGCTTTACAACGAACCAAGGTTTGAAGCTGCATCTAAAAAATTGTCCAGAAAATCTGCTGCACAAAATGTTCGCTGAGGAAAGCAAAAATACACTTAATGATGTTTAA
Protein Sequence
MPRRLFIVIPLQTLRKPIKTPSKELCNICGRTVRNLKKHLDLHQFECPECLTTFKSLQLLQDHQKIHLKNNQLSCTYCPLKFSTNFDLCLHVYKHVKRYICPICGFKSSNKTSGSIKFHIRRHENNFNFRCNICGKGFVGSKKLQDHLEIHTGVPKYECEVCSKKFTVKNYLNLHVRYNHKKEVFGIEEGFQCEVCGRKFTFEKSLIRHLSVIHKIGKNLQVECQICGKLLANNFNLKMHMKVHTGEKDFSCEKCGKGFSHLKHVKRHQKVHLKDNTLLSKNQVNSEENFPLLVDIKEENVSHYEENFPKKSKRLKNKRAARKLDVDVKWTPREEKRSRLRVKKEKPDTPQKLPKNQKANMWTCKYCFKTFSSRKEMFQHRKQHSENEKYSSSEAIKYYYDESHEIYICNNCSAECQDLNEIEKHVQTHEKKFNCPVCKEDLFGPINYSVHVQKHRDDKMFPCPWCQYMSQKKEAMQVHINRLHLQLYDFQCTKCGKCFNDALSFKEHDNVHLNLKPFGCVVCNKNFYYSRYLLSHQLRTHTVRVMDPESKTQFSWTYEDHLQVEMEVSDAEYEPVSEKLKIKTESKTTNHENKMKRTRKSPAKTKKTNDTYNKRKQEHKLWTCRRCLQEFNSRKGLTEHSKLLHQDGMMNNSDEHTFKHDEEQDLYSCNTCSVEFHTKEEVEQHISKVHEEFYSCEVCNHTCKKAYTFALHMKTHSNDDLMACPLCSYSTHRKTCLQTHINRVHYHKFYYTCTTCGKGFNDSVIFKEHNNEHLGIKPFTCVVCEKTFCYSRYMNIHQVRHHTVYIEGILHKTQCSICMKVFSKVETLLKHITSKHKNDDEKNEKRHLRVRKLSAAKALTGISWQCSDCGRKFSSLLTLTSHMEVGCFNLKEPKEEKEELAPISLLSKLPGISAKIVKKPSKTTDRRQESIKPKSSTNSNKFFFMCPKCPQIFSSQELLDKHKGKCLSRGQIFQRKSSSDSNDMEPYHFDRFSNVYICAKCLEEFDFKSGILEHLRSAHKSVKCEHCHMEFDSLIEYGYHSAEHDPTQEISCPCCDFTTDNKTKFALHIETDHPYGNTNLLSKKTANFTCVVCGKKFNNKQKLTAHQRNSHKAAVDVEPSMGARFKDVTPAKSGQYVQPMLCDTCGKNFNSKYRLERHQRAMHEGFRRRRQSRTKCKSSGDPEDDLNLLSRLKKRVKKLTSNFVCKYCQETFNTLKLLKQHKEIHKPFTAYEEEEPNYKFDMLQDLFVCLVCSAEFQEECEAKNHINTHKSTISCNNCEETFKNHFDLGVHSMKHDPDGKMRCPLCSYVSSNSNLYSFKAHMNFVHLKRFPFYCKECTKGFKHFKTFQEHQNTHAGKKPYICIVCSKGFTYQKYLHVHQVRNHQVGTTGKRIENECSTCNRYFYKPESLEEHLQICYKRKKKPKSETPVKAFLCDSCGQTFTEKAKLLEHLRVHKGDLPFVCTWCGKRFPVKSYLKTHERVHTGEKPYSCEFCGKRFAQHAPFRVHRRMHTGERPYVCDFCGKGFTTNQGLKFHKKNCPDNQYIRLKIKRSKLRKPKITSQAVQRQHRKSHKNITSFETEDPTYKFDSIQELYVCETCSAEFQKLSEVQEHLDTFHKEKFKCQECAAIFQTSIDLGMHSIKHSKDKKFKCPLCNYVSRGSNPYNFKSHLTYMHLKKFPYYCQDCGKGFKQLKTIQDHCNLHKGQKPYKCIVCAKSFTCEKYLNSHQVRNHHVSSEGEKSNQKHHVSRKTFKKPNSFLCDTCGQGFIEKSKLLKHIRVHNGDLPFVCNWCNKRFPQKDYLKTHERVHTGEKPYKCQFCGKSFGFHAPFRVHLRTHTGERPYKCHFCSKGFTTNQGLKLHLKNCPENLLHKMFAEESKNTLNDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-