Hham015505.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000069.1:144557-146539[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-10 2.5e-07 30.3 0.0 1 43 18 60 18 61 0.93 2 2 5.7 1.6e+03 -1.1 0.1 12 23 141 153 140 154 0.73
Sequence Information
- Coding Sequence
- atgccCCGAAAATACGTACGTAAGCCACATGTGAAACCAAGGGTTTGTTGGTCAGAAGAGAATCTCGTTGCAGCCATTGATGCCGTCAAATGCGGAAAATGCGGAATCAATGAAGCaagtaaaaatttcgaaattccaTCGAGAACTTTGAGAAGACGAATCGCCCAAAATAACtccaaaaaagttattcttggGAAACCGCCTGCTCTTGGTTTAGAGAATGAACACAGATTGGTTCAACACATACAGAAATTGCAAAATTGCGGTTTCGCACCCTCTGCACAAGTAGTCCGGAAAATTGCTTACCAGtttgccaaaaaattaaacctgttatcaaaattttcgttaaaacgTGAAGATGGTAATTCTGTTGGGATGCATtggttttattcatttatggAGAGGCATCCAGAACTGTCTATCCGGAAAAGCGAAGGCCTGTCCCTCTCTCGAGCGCAGGGAATGAACCGTCAAGaagttgaagatttttacaagttattaaaagaaactttgacAAAATTTGACTTAATCAATAAGCCGCACGCTATTTTCAACATGGATGAAACTGGTATACAGTTGAACAGTATTCCTGGAAAAGTGGTTGCAAAAAAGGGTAGCAAATGCGTTCATGTATTGACATCCAAAGAAAGGGGCGAAAATGTTTCAGTTATAGCCTGTTGTAACGCGGAAGGCACTTTTCTTCCTCCCATTTTGATCCTTAAAGGAGTAAGGAAAAATTGCGCTATCTTAGAGGGGATGCCACCGGGATCGGATCTGTATTTGAATCAAAAATCCTCATTCATAAATTCagaattgtttttcaaatggttACAAGAAATTTTCGTCCCGCGAAAACCTGATGGCTTCGTCATTCTAATCCTGGACGGACATAGTTCACACTGTAGCAATTGGGAGATGCTGAAATACGCTGAAGACAACAAGATAATATTGCTTTGTCTCCCTAGCCATACAACACAGGCTTTGCAACCACTTGATAGATCATTTTTCAAACCGTTGAaggaatattataaaaaagaagcAGACAGGTTTATGTTTTCTAATCCATCGAAAAACATCTGTCGAAATATTGCTGGCAAGTTGATTGGTGCAGCTTGGAATAAAGCCTCAACAAGTACGAACGGAATCTCCGGATTTGCAGCGTGTGGAATTCATCCTTTCAATGAATCTATCGTTCCAgattattttttcagtatttctGATACAACCATTAGTTGCATCAGTTCAAATGAATTGGAAGGCATTGACAATAATTTCCTGGACAATGACGACAACTaccttttcttatttaatgaGAATGAACACCATTTGCCTGCAACATTTGAGAATTCCGTTCAAAATAGCAACCATGAGACTGATTTCTATAGAGACGAAGAACAAATGGATTGTGTTGAAGAACAAGAAGAGGTCAAATCAAGCACAACAACCGCAATTCCTTCAACTTTCATAAATGACTTTGACACGGAGCCGCATTCATCTCATCTTATTGAACTAAGTCAGAACAGACAGACTGATATACTAGATAACCATACACAAAGCCCATCACAATTTCTCACAAAAATAGCTCCTTTACCGAAAATTTCGCACAAAAAGAGTACGCGTAAACAGTCGGCGAAAATCATTTCGTTAGAGAAAgcgattgaaaaaaacataaaaaagacCACTgcgaaacaaaataaaaaaatagaaaaaatcctAAGTgccaaaagcaaaaaaaaacacatgtCTCCAATAAAATTAAGGACATCCTTAAAGAGGAAAGCCAAACCTACAAAAGcatcaaatgaaaatgatgTCGAATGTGTTGAATGTTTGGAGACATACTTCACAACGGCTGAAAAAGTGGATTGGATCCAGTGCATTAGTTGTGGAAAATGGTTACATGAATCATGTACCATGTATTCTGATAATTGCAATGATTGTGGTAGGCAAGCCAAACGAATTCAAGTTACTgaaaaaacatag
- Protein Sequence
- MPRKYVRKPHVKPRVCWSEENLVAAIDAVKCGKCGINEASKNFEIPSRTLRRRIAQNNSKKVILGKPPALGLENEHRLVQHIQKLQNCGFAPSAQVVRKIAYQFAKKLNLLSKFSLKREDGNSVGMHWFYSFMERHPELSIRKSEGLSLSRAQGMNRQEVEDFYKLLKETLTKFDLINKPHAIFNMDETGIQLNSIPGKVVAKKGSKCVHVLTSKERGENVSVIACCNAEGTFLPPILILKGVRKNCAILEGMPPGSDLYLNQKSSFINSELFFKWLQEIFVPRKPDGFVILILDGHSSHCSNWEMLKYAEDNKIILLCLPSHTTQALQPLDRSFFKPLKEYYKKEADRFMFSNPSKNICRNIAGKLIGAAWNKASTSTNGISGFAACGIHPFNESIVPDYFFSISDTTISCISSNELEGIDNNFLDNDDNYLFLFNENEHHLPATFENSVQNSNHETDFYRDEEQMDCVEEQEEVKSSTTTAIPSTFINDFDTEPHSSHLIELSQNRQTDILDNHTQSPSQFLTKIAPLPKISHKKSTRKQSAKIISLEKAIEKNIKKTTAKQNKKIEKILSAKSKKKHMSPIKLRTSLKRKAKPTKASNENDVECVECLETYFTTAEKVDWIQCISCGKWLHESCTMYSDNCNDCGRQAKRIQVTEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00830190;
- 90% Identity
- iTF_00830190;
- 80% Identity
- iTF_00830190;