Hham002677.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000393.1:10385-10699[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-11 2.3e-08 33.6 0.0 2 42 14 54 13 57 0.87
Sequence Information
- Coding Sequence
- ATGGTACGCAAttataaacgaaaaacaaTTCCAATcagtgaaaagaaaatcaaagcAGCCGTTCATGCAGttcgaattaataaaatgccTGTAAAAACTGCCGCTGACAAATTTGGAGTTCCAAGAGGGACTTTAGTAAGCTGGCTAAAAAGAACTACGATGGAACAGACTGAGAAAAATGCTTTACCAACATTGGTCCGTGGGAAGAAGAAGGTTTTCACTTCGGAGGCTGAGTCTATTTTGATGGAATACGTACAAACCTGTAACGACATGTACTATGGTGTGTCGGCCAAACAATTGCGAATTTTGGCGTAG
- Protein Sequence
- MVRNYKRKTIPISEKKIKAAVHAVRINKMPVKTAADKFGVPRGTLVSWLKRTTMEQTEKNALPTLVRGKKKVFTSEAESILMEYVQTCNDMYYGVSAKQLRILA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00830185;
- 90% Identity
- iTF_00830185;
- 80% Identity
- iTF_00830185;