Hham013519.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010002874.1:1626-2102[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-14 1.3e-11 43.9 0.2 2 42 14 54 13 57 0.91
Sequence Information
- Coding Sequence
- ATGAGTTCAGCAGTTGGCCAAAAAAGAGGCAACTGGACTCAGGAACATCTGCAGAAAGCCTTAGaagcaatttcaaaaaaagaaatgtccGATTACAAAGCAGCAAAGGAATTTGGTATTCCCCGTAGAACTCTGCGTAGGTATGTCAAATCAGCTTCCACTGTCAAGGCTAAGTTGGGACGAAAGTTTACGCTTTCGGAGCAACAAAATGCTGAACTTTGTGCCCGAATTGTACGATTGGCAGAAGTGGGCTATGCATTAACACTCAAAATACTGAGATTATGTGTATACAAATACtgcaaacaaaataaaattaaacatcagTTTTCGGATATAAAACAAGTTGCAAGTCAGAAATgggcaaaaaaatttttgaatgtaaacAATATTTCTATTAGAAAGTCTCAAAACTTAAATCCTGGTAGAGCtcagaaattaaacaaatttattgttgaagACCATTTTGCAAAACTTTAA
- Protein Sequence
- MSSAVGQKRGNWTQEHLQKALEAISKKEMSDYKAAKEFGIPRRTLRRYVKSASTVKAKLGRKFTLSEQQNAELCARIVRLAEVGYALTLKILRLCVYKYCKQNKIKHQFSDIKQVASQKWAKKFLNVNNISIRKSQNLNPGRAQKLNKFIVEDHFAKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01510390;
- 90% Identity
- -
- 80% Identity
- -