Hham002179.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010003713.1:1258-1590[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-07 8.9e-05 22.1 0.0 4 39 16 50 13 54 0.88 2 2 6.1e-07 0.00017 21.2 0.0 4 43 68 106 66 108 0.90
Sequence Information
- Coding Sequence
- ATGGTGCGtaattatcaaagaaaaacgcAACCAGTAGACAAACAAGCTTTGTCTAAAGCCATTGAGGCTGTTAAAGGccatgtttctatttttaaagctGCAAAACAGTTCAAGTTAAACTACGAAACTTTACATACGCACGTCCATCGTGCTGGTCTTCAAGAAATAAGACCAATTGCACACAAATCTGTAAACAAATCCAAATTGGACAAGGCGATTTGTGCCGTGAAGGCAGGACGCTCAATACAGAAAGCGgctgaaattttcaagttgaaTTATCAGACATTGAGAAGCAGTATTGAACGTCCAATGCCAACAAAACATAATGGTCAG
- Protein Sequence
- MVRNYQRKTQPVDKQALSKAIEAVKGHVSIFKAAKQFKLNYETLHTHVHRAGLQEIRPIAHKSVNKSKLDKAICAVKAGRSIQKAAEIFKLNYQTLRSSIERPMPTKHNGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -