Hham006582.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- bab1
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000057.1:17340-19316[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-15 1.5e-12 46.9 0.1 2 45 358 401 357 401 0.96 2 2 1.5 4.1e+02 0.7 0.3 6 18 466 479 462 483 0.83
Sequence Information
- Coding Sequence
- ATGGCCCAATCTCAACAGTACTGCCTGCGATGGAACAATCATCGCACCAATCTTTTGTCCGTTTTTGACGAGTTGTTGCAAAACGAAGCATTCACGGACGTAACATTGGCTTGCGAAGAGGGCGGACCAATTCGGGCTCATAGGATGGTTTTGGCGGCCTGTTCTCCATATTTTCAGAGTCTTTTCACGGATTTGCCATGCAAACATCCAGTTGTTGTATTAAAAGATGTGAAATATTCTGAAATTAAAGCCATATTAGAGTATATGTATAGAGGAGAAGTCAATGTTGCTCAAGATCAATTAGCTGCTTTACTTAAAGTAGCCGAGGCGTTGAAAGTTAAAGGCCTGGTAGAAGAAAATCGATCatgtaaaactgaaaaagaaagCGTTTTTCCCCTGAACCATTCACCATCAATTTCAACATCAAACTCTATTGCTCCAAGCGCTATTCACAGTAGCAGCAGTAATGGTTCACCTCCTCATTCAACCAACTCGATTtataaaagttcttataatCTTTACGAGCGAAAAAATCAAGAACACAACCATAGAATGAATCTACCGATTTGGGCAGTACCTGGGTTACCGTTGCCCACGAATACAGCTGCACTTCCAAGTCAAAGTCATCCGCATGCTGCAGCTACCGCGGCTGCTGCAATGTTAAGTAGTGCGTATGAGGCTGTTAGTTCAGATATGTCACCgctcaaaagaaaaaaattgagtagTCTTTTAATGCAAAGAGATACTCCAATTCTTCGGACAGTACTCGGTCAAGGTCAAGCGGACTCTTCACAACCGGTCAGTTTAGTTTGCCATCCTGATAGCGCTGAAATGTCTGCCAGTGAAGAACGCTTAGTCAAGCACATGAAAAATGAACCTTCCGAAGACGCTCAATCTCCATATACCGATTTTACTGAAAGAATGAacgatgaagaagaaaaatccaAACTCGCTATTCCCTCTTCTTCTCCTCAGTCATTCAGTCAAGATGTGAGAACTGGGGCGACTTCAGGAATAGCCAACTACGTTCCTCCTCATAGACCAGATTGGAAAAgatataaacaatattcaaGAGAGGAAATAATGGCGGCGATTGATGCAGTAAGAAATGGAATGTCAGCACTTCAAGCGGCTCGCAAGTATAACGTTCCTTCGAGAACACTCTATGACAAAGTGAAGAAACTGGGCATCACCACGAGCAGGCCATTTAAACGCGGGAGCAATGGCAGTTCTGCTTGTTTCCCGTATAGCTCAGGGTCGCCATATGGAGGACAATTGTCAGAAAACGATgaatctattaataataattcagcTCTGTTGGAAGCCAGCACTTTTCTTCAACATGCTTTAGATCGCGGAGGCGATGAACGCGATGCGTTGGCGGCAATGGCCGCGGCAGCAGCAGCTCACGCTGTTGCTTCAGGTCATTCGACAAGTCCCAATAATTTACAGGCTCGTAGTCCAAGTCCTAGTCCCACAATGCTGAAATATATGAGGCATAATAGTTTGACTCCATCACCAGCTCCACATAGTGATCAAACAAATGGTAGTTCAGAACGAGATCGAGACGAGGATGAGGATCAAGTAGAAGATTTGTCGGTGAATCGGAAACACGATATAGTCGAGTCTCGAGTTATAATGCCTCCGATGAACCATGTTTCTActataatgaaaaaagaagaaatgttaATGGATATTAAAGAAGATTTACGGAGAGAAATGCATGTAGATGGAAACGGtggtaattaa
- Protein Sequence
- MAQSQQYCLRWNNHRTNLLSVFDELLQNEAFTDVTLACEEGGPIRAHRMVLAACSPYFQSLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSCKTEKESVFPLNHSPSISTSNSIAPSAIHSSSSNGSPPHSTNSIYKSSYNLYERKNQEHNHRMNLPIWAVPGLPLPTNTAALPSQSHPHAAATAAAAMLSSAYEAVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQADSSQPVSLVCHPDSAEMSASEERLVKHMKNEPSEDAQSPYTDFTERMNDEEEKSKLAIPSSSPQSFSQDVRTGATSGIANYVPPHRPDWKRYKQYSREEIMAAIDAVRNGMSALQAARKYNVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFPYSSGSPYGGQLSENDESINNNSALLEASTFLQHALDRGGDERDALAAMAAAAAAHAVASGHSTSPNNLQARSPSPSPTMLKYMRHNSLTPSPAPHSDQTNGSSERDRDEDEDQVEDLSVNRKHDIVESRVIMPPMNHVSTIMKKEEMLMDIKEDLRREMHVDGNGGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01107693;
- 90% Identity
- iTF_00830517;
- 80% Identity
- iTF_00830517;