Hham011110.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010001823.1:4734-6611[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6e-13 1.6e-10 40.4 0.1 1 39 24 62 24 65 0.95 2 3 3.6e-19 9.9e-17 60.3 0.0 1 45 79 124 79 124 0.98 3 3 1.1e-16 3e-14 52.4 0.0 1 39 131 170 131 174 0.94
Sequence Information
- Coding Sequence
- GACTCTTTGGCAACGCGCCCATCGTCTAGGAATCGATACACCAAAAAAGAGGGTCCAACAAAGTCTTGGACtgaagaaaacttaaataacGCCCTGGACGCTTTAAGAACAGGCACAATATCGGCTAATAAAGCTAGCAAGGCTTATGGAATCCCGAGCAGTACCCTGTACAAAATAGCTAGACGAGAAGGTATAAGACTGGCCGCGCCGTTTAACGCGGCACCGACCACGTGGACACCCGAGGACCTTGAAAAGGCCCTCGAATCGATTCGTAGTGGTCAAACGTCCGTCCAAAAGGCTTCTACTGAATTTGGCATACCAACTGGGACCCTGTATGGCAGATGTAAGAGGGAGGGCATTGAACTGTCCAGATCGAATCCTACGCCTTGGTCGGAGGACGCTATGGGAGAAGCTTTGGAGGCTGTTAGattGGGCCATATGTCGATCAATCAAGCTGCCATCCACTATAACTTGCCTTACTCTTCACTATATGGTAGATTCAAAAGAGGGATTAAGTATGATTCAGACAATATTGAGATCCAACAAGAGAACGCTCAGCCACAACATATGGACACACATCACTTTGCTGGTTTAGAATATTCGAATGGTCAATCCCAAATTCAATACCACAACCAACAATTGAATAGCTGa
- Protein Sequence
- DSLATRPSSRNRYTKKEGPTKSWTEENLNNALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEIQQENAQPQHMDTHHFAGLEYSNGQSQIQYHNQQLNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -