Hham013091.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- retn
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000005.1:1788451-1840092[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-26 6.3e-23 80.9 0.0 2 89 159 244 158 244 0.96 2 2 7 1.7e+04 -4.1 0.0 28 38 400 410 394 410 0.80
Sequence Information
- Coding Sequence
- ATGGATATGGATCCACAAGACCGGGATGGCGAAATTGGAGATGAAAGTCCTATGTCAAATAATGAAGATGATTTAAGTGACACTGAACGTCAATCTGCAGTTGATCCAGAGGATCAAGATAGTTGTGAGGATCTGCGTAGACAAGGACTTCTTGCTGAACATAATGATGTTCTTgccaaattgaaaatgcaagTCCGAGACATAAATGTTAGGgACGAGTTCGAGAACCAAAGAAATCAACTAAACTTCGCCATGAATAACCGCAACCCTGATGGCAGTTTACCATTTCCAgttccttttaattttcctcATCCTGCCACCTCGTTTTTGCCACCAATGGCTCCTCCACCTCAGGCTGCGTCGTCAGGAAGCCCGAATTCATCGGAAGGAAGCGCTTCATCTCAACATAATTGGTCGTTTGAAGAACAATTTAAACAGGTGCGTCAGCTCTATGAAATCAATGATGATCCTAGACGGAAGGAGTTCCTAGATGATCTCTTTTCTTTCATGCAACGAAGagGAACACCAATCAATCGATTGCCCATAATGGCTAAATCAGTTTTGGATTTGTACGAATTGTACAATTTGGTTATTGCACGTGGCGGTTTAGTTGATGTTATCAACAAGAAACTCTGGCAAGAAATAATTAAGGGATTGCATTTGCCATCGTCCATAACATCTGCAGCGTTTACATTGCGAACCCAatatatgaaatatttgtatCCATATGAATGTGATAAACGACATCTCAGTACGCCAGTTGAACTCCAAGCAGCTATAGATGGTAATAGACGAGAGGGAAGACGCAACAGTTATACTCACTTTGATACGGTTAACAGATCTCCAAATCCCGCCCATCAATTAAATCATTTGTCATTGGTGAATGCGGCAGCAGCCGCTCAACAGCAACAAATGGTAAGAATGAATAGCGTGATGACAGGTGGTTTGGCATTGCATAATGGCGTTCACCATCCGTCCCAACCTCAACCTTTGAATCCAGCCACCAATGGGTTACCAGCTTTGCCGAACTTATCCAATATTGCAACCGGTGACTTGGAATCTAGAATGTTTGAATATGTGAAAGCTATTAATCATGAATTATCGCTAAATTTCGGCAGACAAGTGGCTTCAGATACTTCACCGCGTCACTTGTCGCCACCAACCAATGACAATAGCGCATTGACTCCATTCGAAGTTCAACAAAGGATTCATTTGTTTAGTCTGTATAATGGGAACGCGGCCCTACATCATGGTACGCATCCAGAGCCACAACGAGAACCAATCAACTTATCAGAACCAACTGGGGCAGTAAAACGGGAACCGTCAGATCTGGGTGTACCTGGACCGTCCCCAGCCAGGCGGAGGAAAGTCGAACCAGAATTAGTTGATGAAGCTCGAGCTAGTACGCCTACTCCTCCGGAAAGCCCAGATGAAAGCAATGCCAATCCAACTGTTGTTATGCCAAAGAGGACCTGCATCAAGATTGACAGCAGAGatAATACAAAAGGCGGTGAAAAGTCTTTGGTGGTCTGCATGCAATTCAATGGGATTACTTATGAAGGCGTGTTATTTGCGCAAAATGGTGAATCCAGTGGCACCAATGGTGACAGTAGCGGTTCCAGAACCATTTCCAGCAGTTAA
- Protein Sequence
- MDMDPQDRDGEIGDESPMSNNEDDLSDTERQSAVDPEDQDSCEDLRRQGLLAEHNDVLAKLKMQVRDINVRDEFENQRNQLNFAMNNRNPDGSLPFPVPFNFPHPATSFLPPMAPPPQAASSGSPNSSEGSASSQHNWSFEEQFKQVRQLYEINDDPRRKEFLDDLFSFMQRRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKRHLSTPVELQAAIDGNRREGRRNSYTHFDTVNRSPNPAHQLNHLSLVNAAAAAQQQQMVRMNSVMTGGLALHNGVHHPSQPQPLNPATNGLPALPNLSNIATGDLESRMFEYVKAINHELSLNFGRQVASDTSPRHLSPPTNDNSALTPFEVQQRIHLFSLYNGNAALHHGTHPEPQREPINLSEPTGAVKREPSDLGVPGPSPARRRKVEPELVDEARASTPTPPESPDESNANPTVVMPKRTCIKIDSRDNTKGGEKSLVVCMQFNGITYEGVLFAQNGESSGTNGDSSGSRTISSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -