Hdol005081.1
Basic Information
- Insect
- Hyposoter dolosus
- Gene Symbol
- -
- Assembly
- GCA_963921915.1
- Location
- OY998131.1:3789985-3798903[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.12 11 6.8 3.8 1 23 418 440 418 440 0.98 2 19 0.00014 0.013 16.0 0.8 2 19 476 493 475 497 0.90 3 19 0.0031 0.29 11.8 5.3 1 23 503 525 503 525 0.98 4 19 0.00096 0.091 13.4 0.1 3 23 533 554 531 554 0.92 5 19 5.5 5.2e+02 1.6 1.1 1 23 561 584 561 584 0.96 6 19 3.8e-05 0.0036 17.8 0.7 1 23 588 610 588 610 0.97 7 19 0.0017 0.16 12.6 0.5 1 23 616 638 616 638 0.98 8 19 3e-05 0.0028 18.2 2.0 1 23 644 666 644 666 0.97 9 19 0.00098 0.093 13.4 0.1 1 17 671 687 671 688 0.92 10 19 0.81 76 4.2 1.0 3 20 992 1009 990 1012 0.91 11 19 0.88 83 4.1 1.9 1 23 1018 1041 1018 1041 0.96 12 19 4.2e-05 0.0039 17.7 0.2 1 23 1047 1069 1047 1069 0.98 13 19 1.3 1.3e+02 3.5 0.6 1 23 1075 1097 1075 1097 0.96 14 19 5.4e-05 0.0052 17.3 2.6 2 23 1104 1125 1103 1125 0.96 15 19 0.24 22 5.9 0.9 3 23 1134 1155 1133 1155 0.93 16 19 3.1e-05 0.003 18.1 2.3 1 23 1159 1181 1159 1181 0.98 17 19 0.081 7.7 7.3 2.9 1 23 1186 1208 1186 1208 0.98 18 19 3.3e-07 3.1e-05 24.3 0.5 1 23 1214 1236 1214 1236 0.98 19 19 0.0012 0.11 13.1 1.3 1 21 1241 1261 1241 1262 0.92
Sequence Information
- Coding Sequence
- atggaGATGAAGCTAGAGGAGGCGCAAATCTGCAGGCTATGCGGCGAATGCGAGAGTATATACATCGATGTTTTCGGCGAGGAGGGCACAAAGAGATTCCTCGGAGTCAAGATTCACACGAAAATCAACATTCTGATTGACGAAACGGACCCTCTGCCCAAAGCGATCTGTGTACAGTGTCTGGGTAAGCTCGAATTCGTTTGTGACTTTCAAGAGGAATGTCTACGCACTCAACAAGTGTTGCGCGAACGATACAATCTGCCGCCGCTAACAGACGTTGAAGAGCTAAAAATCGAGGATCCATCGATACCGGCAGGAACGTCGACAAACAACAATAGCAcagacaaaaatttgaatcctCCGTTGGATAATGAGCTGGAGGTAACGACAGCGACGTACGAGAAATCGAGTCCTCCGATTTCAGAGTCAGAAAATCAtcaaacaaaaggaaaaaaaaaattgcgtgcACGTAGGCGATCAATATCGCAGAGTGAGAACGAAAAGCCGGATAGCGAGCGTGAAAATGTGGCTCGTGAGCCGAGCACAGAAAATGCGAACAAGCGTTGGTTGCGAAGTCGAAATTCGACGGCGTCGTCAACGgcgacaacgacaacgacaacaacgacCAACTCGACATCGAGCACGTTGACGAGCGTCGATTGTGCGAAAACGGTAACAGCCTCGATAGCTCGGAGGTTACGAAGTCAAAATGATTCGCTGGAGAAGGGCAAAGAAGTATCAGAAAATACGACCAAAGAATCAACGAGCCCGAGCTCAAAAACGGCAGGAGACGAATCAATGATTCAAATTCCGACTTCGGCGTTGAACAAAGTTCTCACGGTAGTTTCTTCGTCCCCGGACATGGAAGTATCGGTTAAAGAATCGACCAATCGTCAAGGCGACATAGAGGACATAAGCTTTACTCTGGAACTGCGGCGTAAAAAACAAGACACCGAATTCGTCACGGTTCTCGCCAAAGTTTTTCCCGATCAAGGCTCTTGTCTCGTTGGCTCGGGCATCGTGAATCTCTTGGAGAACGAGAACAACGTCGAAGTGGATAAAATCGTAAGCACCATTATAAATGGTTCGTCAAAGAGGAAAAGCATTAATAGCGGAGTGACAAAAATCGACGAGCtcgaagaaatggaaaaaagattgTCGACGACGCAGAATCCCGAGGAATTGTTCCGTGTCGATGGGGAGGAAATCCGGGTCGATGATAACATCGAATACGTTGATAGCCAAAGCGCTTATGCTTGTAAATTGTGCCGGAAAATGTACGAACGTCGAGACAAATGTACGGTACACGTGAAAACTCATCTTGGCATAAAACAATACGCTTGTACACTATGCTGCGCCAAATTTGTTTGTAAGTCGGACGTTATGAAGCACATTAGATGTTCGCACACAAATCCTCGACCTATGCAATGCCCCAAGTGCCCAAAACGCTTCAGATCTAAATTTGATCTGACCGAGCACGACAACGTTCACAAAGGCGTTAAACCTTATCGGTGTAGCGATTGTTCTCAAAGTTATCACCATAAAGTTTCGTTGCAAATGCATGTCAAGTCTCATCAACCGCCACAAAATTTAGCTTGCGAATATTGCGgcaaagtttttccatttcgtacACGTTTGCTTTCGCACATTGGCAGTGTTcacttgaaaaatcgtcgcaaTTTTCGATGTCGTTTTTGTTACAATTTGTACTCGAGTCTAGCTGTTCTAAACGATCACGTCAAATCTCGTCACGCCACCACTTACACTTGCGAAATATGCTCCAAAACTTTCAAGGTCGCCTCCAAATACAAAGCTCACGTTTTGCAACATTCCAATCCAAAGCCTTTCGTCTGCAACGTTTGCAACAATCGCTACGCCTCCAAAGCCTTTTTGAACGAACATCTCCTCAAACACGAGGGCCTCAGAAAACATGTCTGCCAAAAATGCGGTGCGAGCTTCGCCCAAGCTAGCCATTTGGCTGCTCATCGCCATGTTCacggcgaaaaaattcacgtcTGTCCAGAATGCGGACGGAAATTTAACCGACGCGACAATATGAAAATAAGCGAAGCTGATGGATTGCCTCACAGGGTTTGTCTCAAATGTATCGGAGCTCTGGAATTCGTGTGTGACTTTCAAGCGAAATGTCACAAAACTCAGGAAACATTGGCAGCTGCACAGAAAACTTCATCTTCTTCCGCCAAATCGAATGATCCAAAATACTCAGTAAAAATCGAATCAGGAATTAAAATGCCTTCACGagaaggaacaaaaataacgGATTGGTTATTGACGAAAATGGCGCGCCAAGACGCGGAAAATTccatggaagaaaaatgtgataaaGCCCAAAAAAACATTAGCGTTAATGGTACAGAGGAAGCGATACCAAGCAACAGACACATAGAAGTGATAGTAAAGGTGGAGAATCATGAAAATACGGGAGGAGGAGCTGTgattgaaaaaggaaaaatattgagtaaaaataaaatcgtgtgGATACCGAATTTATTGAAGCTGCCGGAAATTTTGAGCCCGAAATCAGCGCGACCAGAAAAATTGCACGGAGATTCTCCGCCGCGGGGAGATGAGGCAGAAAAGGAAACCGCTTCTTGTGGCACTGAGAAAAGTtttgagaagaagaaagaaggcGCTTCTAtggaattggcacgaaagagTGTGATCGAAAAACCGGAAACGGAAGCGGACGATGGTCGGACTAAGCGGAGGGAATCAAGAAGTTgtacgacaaaaaaattatccgtGGTTGAATCGGAGGACGACGGAGAAGGATCTCCGGATGAATCGGACGAAGACGCTACTGTGAAAACCCGGAAATTCGGTAAAATCACGGATTTGATAAGCGAGGAACAAAAAGAGGCAATCGAGAAATTTTACTCTTGCGACATGTCGGCGGTTGACGAGAAATTGGTCATGGAGCAGCTCATATTTCTTGATCGTAAGAAGTTTGGCTGCAAACTGTGCGACGCTTCTTACACTCGACAAGATAAATGTCAAGTTCATATTTGGGCACATCTGGATATGAAACCCTATCGTTGTAACGCTTGCGGATTTTCCACCGTTACCGTCAGCAACATTCGCTGCCACGTCAGAAAAAGTCATCTCAAAATCAAACCGTACGCATGCGATATATGCGAGAAGCGTTACGTCACTTCTTTCCTTCTCGAGGAACACTTGAACACCCATACTGGATCGAGGCCTTACGCTTGTGACATGTGCGAATTTACCAGCGCGAGCAGACAAGTTCTCAGCTACCACAAGACGACCCACAAACCAGTAAAGGACATAACTTGTCACTtctgtgacaaaaaattttattcaaagagTCGCTTGCGCGCTCATTTGATTATCCACAACAAGGACAAAGCTGCAAACATGTGCAAATTATGCTCAATTTATCTGTGCAATAGCGAGGCGCTTCAGAAACATTATGCGAATGTACACAACAAGGAATACGAATGCAATGCTTGTGGAAAAAGATGCAAATCGAAGAAAGCATTGAACAACCATCAGAACgTCCATTTGGCTGCAAAATACAAGTGTACTTTGTGTTCGAACGTCTACAAAAGCAGCCACATACTTAAAGAGCACCTGCTGAAACACAAGGGTATAAGAAAGTACAAATGCAATGTTTGTCAAAAAGATTTTGCTCAGCAGTCTCATCTCGCAGCTCATATGGCAGTCCACAGTGACaagagATTCCTCTGTCCTGGATGTAAACGCCCTTTCAATCGTCACGACAACATGAAAATGCATACAAAACGATGCGATGCCTTTCTCGCAAATCCAGAGCTGGCGGCTCTGCTGACAGCCCGAAGAAGCCAAAGTAAAAGTCTTAAAAAAGATGACGATGAGGCAGCCGCAGTTGAACAAACAGTATCGTTAACCGAGCCGGAAACCACGAAGACTGATACTCGAATAATCAAGGAGATAGCGATCGTAGAAGATGTGCCAAAAACGAGGGATGAGTGCCGCGAAAACTATACAACGGTCGTCATCGAGAACACCATCCCATGTACCTGA
- Protein Sequence
- MEMKLEEAQICRLCGECESIYIDVFGEEGTKRFLGVKIHTKINILIDETDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRERYNLPPLTDVEELKIEDPSIPAGTSTNNNSTDKNLNPPLDNELEVTTATYEKSSPPISESENHQTKGKKKLRARRRSISQSENEKPDSERENVAREPSTENANKRWLRSRNSTASSTATTTTTTTTNSTSSTLTSVDCAKTVTASIARRLRSQNDSLEKGKEVSENTTKESTSPSSKTAGDESMIQIPTSALNKVLTVVSSSPDMEVSVKESTNRQGDIEDISFTLELRRKKQDTEFVTVLAKVFPDQGSCLVGSGIVNLLENENNVEVDKIVSTIINGSSKRKSINSGVTKIDELEEMEKRLSTTQNPEELFRVDGEEIRVDDNIEYVDSQSAYACKLCRKMYERRDKCTVHVKTHLGIKQYACTLCCAKFVCKSDVMKHIRCSHTNPRPMQCPKCPKRFRSKFDLTEHDNVHKGVKPYRCSDCSQSYHHKVSLQMHVKSHQPPQNLACEYCGKVFPFRTRLLSHIGSVHLKNRRNFRCRFCYNLYSSLAVLNDHVKSRHATTYTCEICSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHVCQKCGASFAQASHLAAHRHVHGEKIHVCPECGRKFNRRDNMKISEADGLPHRVCLKCIGALEFVCDFQAKCHKTQETLAAAQKTSSSSAKSNDPKYSVKIESGIKMPSREGTKITDWLLTKMARQDAENSMEEKCDKAQKNISVNGTEEAIPSNRHIEVIVKVENHENTGGGAVIEKGKILSKNKIVWIPNLLKLPEILSPKSARPEKLHGDSPPRGDEAEKETASCGTEKSFEKKKEGASMELARKSVIEKPETEADDGRTKRRESRSCTTKKLSVVESEDDGEGSPDESDEDATVKTRKFGKITDLISEEQKEAIEKFYSCDMSAVDEKLVMEQLIFLDRKKFGCKLCDASYTRQDKCQVHIWAHLDMKPYRCNACGFSTVTVSNIRCHVRKSHLKIKPYACDICEKRYVTSFLLEEHLNTHTGSRPYACDMCEFTSASRQVLSYHKTTHKPVKDITCHFCDKKFYSKSRLRAHLIIHNKDKAANMCKLCSIYLCNSEALQKHYANVHNKEYECNACGKRCKSKKALNNHQNVHLAAKYKCTLCSNVYKSSHILKEHLLKHKGIRKYKCNVCQKDFAQQSHLAAHMAVHSDKRFLCPGCKRPFNRHDNMKMHTKRCDAFLANPELAALLTARRSQSKSLKKDDDEAAAVEQTVSLTEPETTKTDTRIIKEIAIVEDVPKTRDECRENYTTVVIENTIPCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00829001;
- 90% Identity
- -
- 80% Identity
- -