Hdol005581.1
Basic Information
- Insect
- Hyposoter dolosus
- Gene Symbol
- -
- Assembly
- GCA_963921915.1
- Location
- OY998131.1:11923890-11927961[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.36 34 5.3 0.0 1 23 367 389 367 389 0.91 2 12 1.3 1.3e+02 3.5 2.1 1 19 390 408 390 410 0.92 3 12 4.8e-06 0.00046 20.6 1.5 2 23 480 501 479 501 0.97 4 12 0.0001 0.0096 16.5 0.2 1 23 507 529 507 529 0.98 5 12 0.0004 0.038 14.6 2.4 1 23 535 557 535 557 0.98 6 12 7.2e-06 0.00068 20.1 1.3 1 23 563 585 563 585 0.98 7 12 0.00028 0.027 15.1 1.3 1 23 591 613 591 613 0.98 8 12 2.1e-07 2e-05 24.9 0.8 1 23 621 643 621 643 0.98 9 12 0.0048 0.45 11.2 0.2 1 23 649 671 649 671 0.94 10 12 1.5e-05 0.0014 19.1 2.2 1 23 677 699 677 699 0.98 11 12 2.1e-05 0.002 18.6 0.6 1 23 705 727 705 727 0.98 12 12 0.0031 0.29 11.8 4.6 1 23 733 755 733 756 0.95
Sequence Information
- Coding Sequence
- ATGGCTATCGCGGTCGGTGGATTTGATTACTTGTGTCGTCTGTGTGCCGCCAAGACGGGAATTTTAATGGGTTTACCGATCTTCGAAGCCGGCGAACGTTTGcgaaatatcgacaaaaaaatcgccgTCTGCCTACCTGTTCAGGTATCAATGAACGACCAATTGCCGAAAGTAGTGTGCGCGTCGTGCGCTTATAAGCTGGACGAAATGTTTGATTTCcgtgaaaaatgtttgcacaCAGAGGGGCTGTTTATGGAAATGTTGAAGGAAATAAAGGGCGAAGACAGTTGTATAAGAAATTCGCTGGGAAGTGTCCAGGAAATGCCAGTCATACAAAACAGCATGGAGAGGATTCATGAAAACATGGGAAGCGTACAAAGGTGCATGGAGCACATGCAAAACGGGGATTGCGTGTCGAACGGTGACGCGAACGAAACGAGTGTTCACACGATGCAAGTTATGGATGAAATGGATCTGGCCGGCGACGAGCAAGTCGTTAGCCAGGAGGAAATCGGATCTCAAGAAAATGACATTCAAGTGGCAGGGATCCATTGTCTGGATGGGGAAACTGTAAGAATGGTCGACGAGCACATCCGGGAGGTCTCGAATCACGAAATTGCTATGCATCTGGAAGGAGACATGACCGTCGTGGGAGGTCTCACAGTGGACGGCCACCTTAGTCAGCTTGGAATAAATTACGTGACGACAATAGCCACGGAAAATGCGAGCCAGGAGCAACAAATAGTCCATTATTGCGATAACGTCAAATACGAGAGGGTCGATGTCAAGGAGAACTATCAGAGGCTACAGGAGAGACTAACCGTGGAGGTTGCGACGCATCCTAGAAAAAATGACgTCGAAACCGACGGTTTTTCGTCGTCGCACCGAGAAGCTGAAAGCGCGTTGGAGGAGAGGATAATGACCGAGAGTGAAACGCGTTCGACGTTGGAACCTTTGCACGGTGAAAATGTAGCTTCGACGAGTCACGCTCCGAGCAAAGAACCGGAGATAATAGTCGAATATACGAAACGAACGAAAGAAACATTATTAGAGAATATTCTAAACAATCCGACGTTGGACGAGACGGGATCGAGTTGGTACGTTTGTCCATTTTGTAACGAAGCAGCAACCGAGCCGAATAGTTTAGTGGGCCATTTCGAGCAGCATTTTTGTTGCTGCAATTGCGGTTTGTACTTTACGAGCGTCGAAGGTTTGAGTTTGCACGGTGACCAGTGTGATTTTCAAAAGACGGAACAATTGGACATtgtggaggaggaggaggaagaggaggaggaagaagcaacgaacgaggaagaagagagaatGGCAAAGAGTTTAGAAAAGCGAACAGAAAATTCGTCGACGATAGGAAACCCTGGAGACGAGGAGGAAGCAGCAAAGAGACAATCGAACGTCCGACAAAAATGGACTCCCAAGGTATGTGCTCAGTGCGGCAAACAATATCGCACTAATTACAAATTGCAAGAACACATGAGAAAACACACCGGAGAAAAACCTTTCCAATGCTTACTCTGCGAGAAAGCATTCCGCAGCAAAATTGGCTTGGCTCAGCACACAGCTACCCACACCGGCGAATTCGATTACAACTGCTCCACCTGTGGCAAAGGTTTCCAATGCAAAAGTTATCTCATCGTTCATCAACGCGTACACTCCGATTTAAAACCTTATCCTTGTAGCACTTGCGGCCAAAATTTCAAGACGAAACAGTCCCTCTTGGATCATCAAAATCGTCACATGGGCGTCAAGCCTTATATGTGCGAGATTTGCGGACGTGGTTTCATAACCAAAGGCCTGTGCAAAAGCCACCAAAAGATACACTCCGGCAAAGACAATCGTCAATATCCCTGCCAAGTCTGCAACAAAATGTTCGTCAGCAAAAGTTATTTGAACACTCATTTGAGGATTCACACCGGCGAAAAACCTTATTTGTGCGAGGTTTGTGGCAAAGGATTCTTGACCAGAGTCGACCTCAAAATCCACTCGACTATGCACACCGGGGAGAAGAGTTTCAAGTGCGAAATGTGCGGCAAAGTCTTTGCCAGACGCGCCGCTTTGCGCTGCCATCGCCGATCCCACACCGGCGAACGTCCCTACCGATGCGATGTTTGCGGCAAAACTTTCACTCAGTTCAGTCCCATGGCCATTCACAAACGTCTTCACACTGGTGAACGACCCTACGAATGCGACGTTTGCGACAAAGCCTTCGTTTCCCGATCCACCATGATGtgccacagaaaaaaacatcatttacCTTTAACATCCACCTCCAAAGAATCCCTCGCCAACTCGGACCTTAACAACCTCAAAAGTCCCATCGATATTGGCCTTACGGAGCCGCGAGACCCTTTACAACTTGATACCGATTAA
- Protein Sequence
- MAIAVGGFDYLCRLCAAKTGILMGLPIFEAGERLRNIDKKIAVCLPVQVSMNDQLPKVVCASCAYKLDEMFDFREKCLHTEGLFMEMLKEIKGEDSCIRNSLGSVQEMPVIQNSMERIHENMGSVQRCMEHMQNGDCVSNGDANETSVHTMQVMDEMDLAGDEQVVSQEEIGSQENDIQVAGIHCLDGETVRMVDEHIREVSNHEIAMHLEGDMTVVGGLTVDGHLSQLGINYVTTIATENASQEQQIVHYCDNVKYERVDVKENYQRLQERLTVEVATHPRKNDVETDGFSSSHREAESALEERIMTESETRSTLEPLHGENVASTSHAPSKEPEIIVEYTKRTKETLLENILNNPTLDETGSSWYVCPFCNEAATEPNSLVGHFEQHFCCCNCGLYFTSVEGLSLHGDQCDFQKTEQLDIVEEEEEEEEEEATNEEEERMAKSLEKRTENSSTIGNPGDEEEAAKRQSNVRQKWTPKVCAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGEFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHMGVKPYMCEICGRGFITKGLCKSHQKIHSGKDNRQYPCQVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCDKAFVSRSTMMCHRKKHHLPLTSTSKESLANSDLNNLKSPIDIGLTEPRDPLQLDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00828969;
- 90% Identity
- iTF_00828969;
- 80% Identity
- -