Hdol002802.1
Basic Information
- Insect
- Hyposoter dolosus
- Gene Symbol
- -
- Assembly
- GCA_963921915.1
- Location
- OY998129.1:31018806-31022534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00065 0.062 13.9 0.8 2 23 23 44 23 44 0.97 2 12 0.00025 0.024 15.2 0.4 1 23 82 105 82 105 0.98 3 12 5e-06 0.00048 20.6 0.5 3 23 113 133 111 133 0.97 4 12 0.00015 0.015 15.9 3.8 3 23 141 161 139 161 0.96 5 12 3.9e-07 3.7e-05 24.1 0.7 1 23 167 189 167 189 0.98 6 12 0.0054 0.51 11.0 3.1 1 23 222 244 222 244 0.97 7 12 4.8e-05 0.0046 17.5 1.1 1 23 605 627 605 627 0.97 8 12 0.0001 0.0095 16.5 0.7 1 23 634 657 634 657 0.93 9 12 1.8e-05 0.0017 18.8 0.1 1 23 665 688 665 688 0.97 10 12 6.8e-05 0.0065 17.0 5.9 1 23 694 716 694 716 0.98 11 12 0.0019 0.18 12.4 4.2 1 23 722 744 722 744 0.97 12 12 1.8e-07 1.7e-05 25.2 2.0 1 23 750 772 750 773 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAATGACCAGAATTCGGGAAAATTGTtcatcagaaaaaaacaatgaaactgGGTCTCGCAGATGCGCGACGTGCGACAAAGAATTTACAAGCGAAAAGAGTTATTTTGGTCATTTGAGAATTCACAGCAACAGAGAAGAACAGAGTTGCGACGTTTATCCAGATCCAGAAGATTTTTTGGAGCCGGAGGGCGgagcgaaagaaaattcaacgtcTTTGCATTCTTCGTCAAAGCCTTTCAAATGTTTGATTTGTGAGAATGTTTTTGATCGCGCGTCGCAGCTCGATTATCACAGACGGAGCGTGCACATGGGCGAAAAGTCTCAGATTTGCCAGATTTGCGGAAAAGgctttttccgaaaaaacgatttacaAACGCATCTCAACGTTCATCTCGGCACGAACCAATCGATTTGCGAAGTGTGcggaagaaaattcaatcacgTTTCAAACTTGATCAGACATTGTAGAACGCACGCCGGCACAAAACCGTATCCTTGCACAATTTGCGGCAAACGCTTTACGCAAATAAGCTCTTTGTCCAGGCACAAAAACGTTCATGGACGAAAGTTgagcgaggagaaaaaaaaagagaaaacagaaattgtTCTCCGCGGGGAAGAATCTATGACGCAAAGAAAAAGCGCGACGCGTCAACATTACTGCAGAGTTTGCGGCGAAACCTTTCAGTTTATGGTTTTGCTCAGACAGCACAAAAAGACGCATGcaaaaattgctgaaaaaacgaaaatgcctAATTTGCGTAACGGGGAAGATgagaaatccatttttcatgaCTCTGTCGCAAATAATTCCATCGCGAATCTTATGGACTTGGACAAAATCAACTCCATGGAAGTAGAACGTGATGTTAGCATTTCGGATATTCTTAGCCCTTATAATTGCAGCGATATCGAATTGTCTAATGGGGAAAATCTTGAAGAAAAACTCTATGGGAATTCGTCGAAAGAGTGTTTAACAAAAGATTACGATATTGCACAATGTCTGGAACATGTCGATTTGTCGACCTCCCAGAGTCACGTTCCTCCTTCGATAGATCCGACGAGCCAGAAGATTCAggaagaaattgataaatcgaaaatgaacGAGAACGTTCGGGAATATCCGGCCGAGGTTGTTTCTTCGAAGTCGGAAATTGCCAAGAGTAAAGTGTATATAGAAGTCGAAGGAATATCAAGCGTCGACCATCTCGAAGAAATTTGTTTCGAATCGAaggaggaaagaagaaaaagggaggaagaaaatttgcagacTGTAGAAAAGCCAAGCACGGTAGCAGAACATTTGGATTTAAAGAGGCACGAGACTGAAATGGAAGAGAAACAACTTTACGAGTTGATAATCAATAGTAAATCGAACGATTTCGAAGATGTTGTTACGATTGAGAAAAGcaaagaacaatttttcactgaGATGGTCGAGGATAATGTCGAAAACGCGGAGAaacaaaatgacaaatttgGGAATGAATGTTGCAGcgaatttcataaatatttacacaacGTGGGTAATTGTCGAGAGGTGGAAAATTGCATGGATCAAGAAAACACACCGATGGTTCGTCTCGTGCAGAACGAAGATggggaacaattttttgagcTTGTGCGAGAACCTTTGGAGTACGAAAAGAATCGTGGGATTGATAAAAACCCCGATCCTTCCGCTCTGGTCGAAGAAGATTCGAAAGTTTCGCATACGAGCAACGCGAACCCTGGAAccaggaaggaaaaaaaagaaattgccaTGGAGAGTCTTCCAAAAGTTGTAAAAAGTCGTAGCCGCAAATTCAAATGCAACGAATGCGACAAATGGTTTTCCACTGCTTACAATTTCAAACAACACGCCGGCACCCATTTCTTCGACCAACAAAAATATCGCTGCGAACATTGCGGCCTTTCCTTCGCTTGGAAATCTACCCTCAACAAACATTTGGCCGGCAATCATCGTCCCGATGGaccacaaaaatttgtttgcgAAATTTGTCCCAAAGTCTACAGTACGCTCTCACAAGTTAACGAACACGTGAAGCGAGATCACTTGAAGGAGCGAAACCACACGTGCACATTGTGCGGAAagtcgtttttcaaaaaattcgatttaaaGACGCACAGTCGAACCCACACGAAGGAGCGACCGTACATTTGTCGAGCATGTGGCAAGGGTTTTCATCATCAGAGTCACATAATACGTCACGAGCGTATACACTCGGGCGAACGGCCTTACGAGTGTCAAATTTGTCAGAAAACATTTGCCCAGCCAAGTTCCTTGAAGGCTCATCGACAGAGGCATCATCGCCAAGtcagaatcgatattttggagTATCGCATGGACGAAGACGATCCTCTAACCCTGGCTGTGCAATAA
- Protein Sequence
- MDPMTRIRENCSSEKNNETGSRRCATCDKEFTSEKSYFGHLRIHSNREEQSCDVYPDPEDFLEPEGGAKENSTSLHSSSKPFKCLICENVFDRASQLDYHRRSVHMGEKSQICQICGKGFFRKNDLQTHLNVHLGTNQSICEVCGRKFNHVSNLIRHCRTHAGTKPYPCTICGKRFTQISSLSRHKNVHGRKLSEEKKKEKTEIVLRGEESMTQRKSATRQHYCRVCGETFQFMVLLRQHKKTHAKIAEKTKMPNLRNGEDEKSIFHDSVANNSIANLMDLDKINSMEVERDVSISDILSPYNCSDIELSNGENLEEKLYGNSSKECLTKDYDIAQCLEHVDLSTSQSHVPPSIDPTSQKIQEEIDKSKMNENVREYPAEVVSSKSEIAKSKVYIEVEGISSVDHLEEICFESKEERRKREEENLQTVEKPSTVAEHLDLKRHETEMEEKQLYELIINSKSNDFEDVVTIEKSKEQFFTEMVEDNVENAEKQNDKFGNECCSEFHKYLHNVGNCREVENCMDQENTPMVRLVQNEDGEQFFELVREPLEYEKNRGIDKNPDPSALVEEDSKVSHTSNANPGTRKEKKEIAMESLPKVVKSRSRKFKCNECDKWFSTAYNFKQHAGTHFFDQQKYRCEHCGLSFAWKSTLNKHLAGNHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKERNHTCTLCGKSFFKKFDLKTHSRTHTKERPYICRACGKGFHHQSHIIRHERIHSGERPYECQICQKTFAQPSSLKAHRQRHHRQVRIDILEYRMDEDDPLTLAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00828962;
- 90% Identity
- -
- 80% Identity
- -