Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.2e-07 0.0002 21.1 0.1 3 43 21 61 19 63 0.82

2 2 0.27 1.7e+02 2.2 0.0 12 24 141 152 127 153 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.2e-07	0.0002	21.1	0.1	3	43	21	61	19	63	0.82
2	2	0.27	1.7e+02	2.2	0.0	12	24	141	152	127	153	0.86

Coding Sequence: ATGCcgcgaaaatataaaagaaaacctGAGACACAGCCACGGGTTATTTCATGGACTGCTGAAAGAATGGCTGCAGCGCTAGTGGACATGGAGGGAAGAAATATGGGAGTGAATGCTATTTCAAGGCTCTATGAAATTCCATCGCGAACTCTAAGACGATATTTTAAGAAGGGGTTCTCAGAAAAAAGGTCTAAAGGAAAGCATCCGGTACTGggtttcgaaaatgaaaaacgtcttGTTTCTCATATTAAAAAGCTCGAAGCTGCGGGTTTTCCTCCAGATCGACGAACTATACGCATGCTTGCTTATCGATTTGCTGAAAAATTACAAGTCAAGCACAATTTTAATAAAGAAATGGAAATGGCTGGCTATCCTTGGTTGCAAAGTTTCTTAGAGCGAAATCCTGAACTCAGTGTTAGGGTTGCCGAAGGTTTATCAGTAGCCAGAGCACAAAGCTTGAACCGTGAAGAGATTTTGTTATCATTTCGTTCAAAAGTTACAGCGATGTATCTGTGGTCCTGCCGATGTCACGTTACTTCAAAATATAACAAATTACGTACTAAAACCTGGGATCCCCAAAATCAAGATCACACGTGGTGGTCCTGCTGGTGTCACGCATACGATAATTCCCTACACTAA
Protein Sequence: MPRKYKRKPETQPRVISWTAERMAAALVDMEGRNMGVNAISRLYEIPSRTLRRYFKKGFSEKRSKGKHPVLGFENEKRLVSHIKKLEAAGFPPDRRTIRMLAYRFAEKLQVKHNFNKEMEMAGYPWLQSFLERNPELSVRVAEGLSVARAQSLNREEILLSFRSKVTAMYLWSCRCHVTSKYNKLRTKTWDPQNQDHTWWSCWCHAYDNSLH

Sequence clustering based on sequence similarity using MMseqs2