Basic Information

Gene Symbol
ct
Assembly
GCA_963921915.1
Location
OY998135.1:12988714-13006591[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.5e-27 5.8e-24 84.1 0.0 2 72 526 597 525 602 0.95
2 3 2.6e-32 1e-28 99.3 0.0 2 77 936 1012 935 1014 0.96
3 3 1.6e-30 6.4e-27 93.5 0.0 3 76 1171 1245 1169 1248 0.96

Sequence Information

Coding Sequence
ATGATCGAAGGGATCAATCGATTGGTCGAAGAGGTTTCGAGGTTACAGCAAAGCTTGCAGCGTCTCCAGGAAACGAGTTCGCAGACGGCGTCGCGGCTCGAGGAGGAGCTCGAGGCACGACGACAGCATACCGCTCGTTTGGAGAGCAAACTTGAACGTCAGCGTGACTACGACGATATCAAGCGTGAGATAAGCATTTTGAGATCGGTCGATCTCTCGCAAATACCGACCGGCGAGCCCGGCAAGAGCCTCGAACATCTCCTAATGGAAAGGTCCAAAGCGTTGCAACAAGCCGAAACACTCAAACCTCCCAGCACGCCCGATGCACTCGGTGGACTAGCCTCACCCCTTCAGCGCACCGCGACCGCTTCACCCCACGCTCTAGGTGGTGGTGTAGGTGGTGCTGCTGGTGTCGTGATTGGTGGGAGTGCTGCACAGCCACCCGCGTCCTCCCTCGTCTCCTGTTCCCAACAAGCGATCCCGAGTCGCTCGACCCCGACACCCTCGTCGGCCACTTCGACTGCCTCGAGTCTCCTGTTCCCACCTCCTCTCCAGAATGTCGAAACCTTTGGCTCTTTCCTCGGTGAGGAGATCGTCGCCAACTGGAGGCGGTCCCTGGAGAGATCGATCATAAgtcagcagcagcaacagcagcagcaacaccACCATCAACAACTGCATCAGCACCCATcccaacaacaacagcagcaacaacaacaacaacaacaacaacaacaacaacatcccCAGCAACAACAATCGCAACTGCAGCAACAATCATTATCATTACAAACACAAAACCAAGCTCTCTCCCAACTGCAGCAGTCACAACCGGTTGTttccgctgctgctgctgctgttgcggTGCATCAAGCAttgcaacagcaacaacaatcgATGCACTCGTTGCATCAAGCAACGACAACGAACCTAAATCACCTTCCATCACCAACAGATAACCCATCGTCATCGGCATCGTTAACGAATACACCAGCCAAGTCGAGCACGCCACAATTGGGGGGCAGCAGTCTAATGAGTGGCGGCGGTGCGAGCGGTGGTTGTCTGGACGCGACGGAAAAAGCACCAACGCCGATACCGGGCCACGAAACACCGGCACCACCAACACCCTCCTCGACGGTCGCGCTGACGTCACCCTCCATACCGATTGCCGTCAATGCACTACAACCGCCACATTCAGCATCTACTGCAACCACAACTATTCTCGACACATTACACACGaccaacagcagcagcattATAAACGGTTCGAGCATAGGAATGTTACCGAGCATGATACCAACGTCGCTTCCACCAAAGAGTCCTCAGGAGGAATCCTGtcacaataacaacaacaatagcCATCACTTAGCCAACAACAACATTGGGCCTCTGATCACATTGGACACGTTGAAGAGTCCTTTTCGATTCGACGATCGAACCCATCCGTTCAGATTCGGGGATGAATTTGGAGCGGCAGGAATGGCCGGTAGACTCGGAGAGTCGTTGATACCAAAGGGCGACCCAATGGAAGCGAGACTGCAGGAAATGTTGCGTTACAACATGGACAAATACGCCTCCCAAAACCTCGACACGCTTCACATCGCGAGGCGGGTCAGGGAATTGCTATCGATACACAATATCGGACAGAGACTCTTTGCGAAATACGTTCTCGGACTGAGCCAGGGAACGGTCAGCGAACTCCTGAGCAAACCGAAACCCTGGGACAAATTGACGGAGAAAGGACGTGACAGCTACAGAAAGATGCACGGATGGGCTTGTGACGAAAATGCTGTGATGCTACTCAAATCCCTCATACCGAAGAAAGAGTATGTTTCAGGCAAGGAGCAGGGTATGCCACCATTTGGACGTGCCCCACAGGACGGAGGTGGGAATGACATGAGCGACGAGAGGCTAGCGCATATACTCTCGGAATCGGGACACCTACAGATGAGCAGAAGCGAGCATGAAACTTCGAACGACGCAGACAGCAAAAGTCCGAGTAGACTCGGATGTCCGAGTCCATTTGGTAAGGATCGAATGGACAGTCAGAATAGAAGACTGAAGAAATACGAGAACGACGACATTCCCCAGGAAAAAGTTGTGCGAATATATCAGGAAGAATTGGCCAAATTAATGGGCAGACGACCGGAGGATCTTCGAGGTCCACGTGACTTCACACCGAGCGCGATGTTTCCGCACTTTTTCAGTGGTGGCCAGAGTCTGCAAAGCATGGAGAGAACGCAGGAAGACATAAGAATAGCACTGGACGCATATCACCGTGAATTACAAAAGTTGAACGTAACAACGGGTCAAAGCGCTGCATTGGCTGGTTTGGGAGGTTTGCCAAACATACCTGGATTGTTGGCACTTCAGCAACAAGCGCTACAGCAGCATCACATGGCAGCAGCGAACGGAGGAGTGGTGCAAGATCTGAGTTTAACAAAAATGGATCCTCGTAACAAAATGATGAACGGAGTAACGGACGAGGAGAAGGATAAGATGGAAGAAGCGATGAGGCACGCAGGGAGTGCGTTCTCGTTGGTGAGACCAAAGCAAGAGCCGAGCGGGCCTCAATCGACACCGGGTGGTTCGAGCGCGAGTTCGCCGCTCGGCAACTCGATATTGCCACCGGCAATGACACcgaacgaagaattttcagGAGCAGCTGCAGCCAGTCCGCTCCAGAGAATGGCATCGATAACCAACAGTCTCATAAGCCAACCATCGACACCGACGCATCACGCGACAACGCAACGACCCCTCAAAGCAGTTTTACCGCCGATAACTCAGCAGCAATTTGACATGTATAACAACCTCAATACCGAGGACATAGTCAAAAGAGTGAAAGAACAACTCTCCCAGTACTCGATATCGCAACGTCTTTTCGGGGAATCGGTGCTGGGTCTTTCGCAAGGCTCCGTATCGGATCTTCTCGCAAGACCCAAACCATGGCACATGCTTACGCAAAAAGGCAGAGAGCCTTTCATCagaatgaaaatgtttctcgAGGATGACAACGCCGTGCACAAATTAGTCGCTAGCCAGTACAAAATCGCTCCGGAGAAGCTAATGAGGACCGGCGGCTACGGCGGCCTGCCTCGTAAGTTTAACTCAGCTTGCGGAACCCCAATGAAGCCTATGCCACCGACCAAATTGGTGCAAGAACAATTGCAAAACGCAGCGAAAGCTCAGGCAGCCGCGCAAGCAGCAGCTCAAGCTGCAGCTGCAGCGGCGCAGCATCAGCAGGAGAATCAGATGCAGCTTGGTCCACCGCAACCGAGTTCGCAACATCCGTCGCTCGCTCAGCCACCGACCCCGTTGATGCTGACACCGCCAGGACCTCATCATCCTCATGCTCAACTGAGCATACAAGAATTGGCGAAGAAGCAGCAACAGcagcagcagcaacaaatGGGTCTGCACTCGCCTCATCACCAGATGGCGCCATCGCCACTGCGAAGTCTTCATCAACACATATCGCCCAGTGTTTACGAGATGGCGGCGTTGACCCAAGACCTCGACACGCAAACGACAACGACCAAGATAAAGGAAGCTCTATTGGCGAACAACATTGGCCAGAAAATATTTGGGGAAGCGGTACTGGGTCTCTCGCAAGGATCGGTCAGTGAATTACTGAGTAAACCAAAGCCGTGGCACATGCTCAGCATAAAAGGTCGTGAGCCGTTCATACGAATGCAAATGTGGCTTTCGGATCCGCACAACGTCGACAAGCTCCAggcattgaaaaacgagagaagagaGGCGAACAAGAGACGACGAAGCAGCGGCCCTGGCCATGACAACAGTTCAGACACATCGAGCAACGACACCGCCGAGTTCTATCACGCCGCATCACCCGGTCCTGGACCACCATCAGCAAAAAAGCAACGAGTCCTTTTCTCCGAAGAACAAAAAGAAGCTCTGAGGTTAGCCTTTGCCCTTGATCCATATCCGAACGTCGCGACGATCGAGTTTCTCGCTGGTGAGTTGGCCCTCTCTTCGAGGACAATCACAAACTGGTTTCACAATCACCGGATGAGACTCAAGCAGCAAACGCCTCATGGACAACCGGAGCCACAATCACCGCGTGAACCCGGCCAACCTTTCGATCCTGTGCAATTTAGGCTACTCCTCAATCAAAGACTCCTCGAGATCCACAAGGAACGTTTGGGTATCGGAAACGTACCGATTCCCTACGGACCATATTTTAATCCCAACATAGCGACACTCATGAACAACGCACTCAAGGAGCAATGCTCCGGCCTCGATCTCTCAATGGGAACCTTGAAGCGAGAACCGAACCAGGAATTCGAGGACGAAGACGCGGACGCTGACGACGCGATGAGTAACCTTGGCAGCGAAGATTCTGAGGGTTCGGCGGGTAGTATGAAGCGGAGCGATACGACGGATTTGAGCCAACAACCCTCGGTACCAACGACCGCAAGATCGAGCAGAAGAAAACCGGCAGCGCCACAATGGGTCAATCCGGAGTGGCAAGAGCCCGCGAGAACGGGTGACGAAGTAATCATAAACGGAGTTTGCGTTATGCAGACCGACGACTACGGCGTTAAGCGAGAAAACGAGGAAACGGTCAGAGTGGAACCAACCCCGGTACAGGATCGTTACGAGGAAGACGCAGCGAGCGACGTGTCCTCTGTTTCAGCAAACAACGGCCAGGACCGTGAGAGTCCCTTACCGAGTTTGAAATCGACTCAAAACAGTCCAGCAACCTCCCCGAGACCGCCATCGACCTCACAACAGCAACAAACGCAACAACCGACCGAGGACGACATCCCAACGAAAGACATTGTCAAGAACGAGCCGGAGGAGACGTGGGACTATTGA
Protein Sequence
MIEGINRLVEEVSRLQQSLQRLQETSSQTASRLEEELEARRQHTARLESKLERQRDYDDIKREISILRSVDLSQIPTGEPGKSLEHLLMERSKALQQAETLKPPSTPDALGGLASPLQRTATASPHALGGGVGGAAGVVIGGSAAQPPASSLVSCSQQAIPSRSTPTPSSATSTASSLLFPPPLQNVETFGSFLGEEIVANWRRSLERSIISQQQQQQQQHHHQQLHQHPSQQQQQQQQQQQQQQQQHPQQQQSQLQQQSLSLQTQNQALSQLQQSQPVVSAAAAAVAVHQALQQQQQSMHSLHQATTTNLNHLPSPTDNPSSSASLTNTPAKSSTPQLGGSSLMSGGGASGGCLDATEKAPTPIPGHETPAPPTPSSTVALTSPSIPIAVNALQPPHSASTATTTILDTLHTTNSSSIINGSSIGMLPSMIPTSLPPKSPQEESCHNNNNNSHHLANNNIGPLITLDTLKSPFRFDDRTHPFRFGDEFGAAGMAGRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHGWACDENAVMLLKSLIPKKEYVSGKEQGMPPFGRAPQDGGGNDMSDERLAHILSESGHLQMSRSEHETSNDADSKSPSRLGCPSPFGKDRMDSQNRRLKKYENDDIPQEKVVRIYQEELAKLMGRRPEDLRGPRDFTPSAMFPHFFSGGQSLQSMERTQEDIRIALDAYHRELQKLNVTTGQSAALAGLGGLPNIPGLLALQQQALQQHHMAAANGGVVQDLSLTKMDPRNKMMNGVTDEEKDKMEEAMRHAGSAFSLVRPKQEPSGPQSTPGGSSASSPLGNSILPPAMTPNEEFSGAAAASPLQRMASITNSLISQPSTPTHHATTQRPLKAVLPPITQQQFDMYNNLNTEDIVKRVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGLPRKFNSACGTPMKPMPPTKLVQEQLQNAAKAQAAAQAAAQAAAAAAQHQQENQMQLGPPQPSSQHPSLAQPPTPLMLTPPGPHHPHAQLSIQELAKKQQQQQQQQMGLHSPHHQMAPSPLRSLHQHISPSVYEMAALTQDLDTQTTTTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQMWLSDPHNVDKLQALKNERREANKRRRSSGPGHDNSSDTSSNDTAEFYHAASPGPGPPSAKKQRVLFSEEQKEALRLAFALDPYPNVATIEFLAGELALSSRTITNWFHNHRMRLKQQTPHGQPEPQSPREPGQPFDPVQFRLLLNQRLLEIHKERLGIGNVPIPYGPYFNPNIATLMNNALKEQCSGLDLSMGTLKREPNQEFEDEDADADDAMSNLGSEDSEGSAGSMKRSDTTDLSQQPSVPTTARSSRRKPAAPQWVNPEWQEPARTGDEVIINGVCVMQTDDYGVKRENEETVRVEPTPVQDRYEEDAASDVSSVSANNGQDRESPLPSLKSTQNSPATSPRPPSTSQQQQTQQPTEDDIPTKDIVKNEPEETWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2