Hdid012795.1
Basic Information
- Insect
- Hyposoter didymator
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold357:1491327-1497965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.08 6.8 7.2 0.3 1 21 73 93 73 94 0.93 2 17 0.0028 0.24 11.8 1.1 1 23 100 123 100 123 0.91 3 17 0.063 5.4 7.6 5.3 1 23 133 156 133 156 0.92 4 17 2.1 1.8e+02 2.8 1.6 1 20 311 330 311 334 0.80 5 17 0.049 4.2 7.9 0.2 5 23 341 360 339 360 0.93 6 17 2.1 1.8e+02 2.8 0.2 2 21 415 434 414 435 0.84 7 17 0.011 0.94 9.9 0.0 1 20 467 486 467 488 0.94 8 17 0.00014 0.012 15.9 0.1 2 23 496 518 495 518 0.94 9 17 0.13 11 6.6 0.5 3 23 530 551 528 551 0.91 10 17 2.4 2.1e+02 2.6 3.3 2 19 583 600 583 601 0.90 11 17 0.0024 0.2 12.0 3.6 2 23 611 633 610 633 0.95 12 17 0.00039 0.033 14.5 3.2 1 23 644 667 644 667 0.94 13 17 0.0017 0.14 12.5 0.1 1 23 706 728 706 728 0.95 14 17 0.0013 0.11 12.9 1.6 1 23 734 757 734 757 0.94 15 17 1.4 1.2e+02 3.3 2.1 2 23 767 789 766 789 0.95 16 17 0.0088 0.75 10.2 0.1 1 23 874 897 874 897 0.95 17 17 0.12 10 6.7 0.7 2 23 966 988 965 988 0.90
Sequence Information
- Coding Sequence
- ATGCCTAGGAATGAAAAGAAAGTTGTCCTGAGAGAAGCTGGAAATGACAAGACTGCGGAACAAGTTGTAGCTCGAACTACTCCATCACAAAAAAATGCCAACAAAATTCAAAACTCCGCTAAGAAGTGCAAACGCAAAAGATCCAAAAAAGTGATTCCGGTGGAGGAGCCGCTGAAACATCTGCAGCATCTCAAAAAAGTGAAGATCCACAATCGTTTTCAATGCGAAATATGTTTCCTTGAATTTGAAAATTACTTCATGTTGCGCGGTCACAACAGAATGTTTGGGAAACCAAGATTTCCTTGCGATACTTGCGGCACAAAGTTTGCGAGCCAAAGACAATTGCGGTTTCACATTGAGCACGCTCATGCCGCTATCAGTATTCCTGGATACTCTCATCGGTGCAGCATCTGCAATCAAGTATTCAGGGACACATCTTTGCGCCATGCTCACATATTCCATAATCACGAACGAGACCAAAGACCTAAATTATCCTTACCTTCACCTACTCAGCCAACTCATGAGGAAAGTGGACGAAAGCAGATTCTTAAATTCGATACGAAGTCGGCGAACAAAAATGATTGTTCGACACCCGATACCAAGTGGGTTGAAAGCTACGGAAGCATGAAAAGCGAGCTAGATTTTGTCAAAAACAAATTCGAAGCTGATGGAGTAAAAATTCGAGGCGATGGGGAGCCGTTGGAAAAGTTGGGAAATCGTGAGAAGCTACAAATGGTCGAAAATAAATTCAATGTTAATGGAGTAAAAACTCAAAGGGACTCGAAGTCGTTGGGAAAATTAGAAACTCACATGGACCATGATGTCAGTAGTTACGACACTCATCGACTCGACAATGAGTTAAGGATAAAATACGCGTGCAAGCCGTGCCGCGTTGTACTGACAAAGTTGAGTGAAAAAATAATTTCGCCATTTTGCTGTGAATTCTGTAAAATAAGTTTCCCTTCGGAGGAATTGCGAGATAATCACGTGACGGATAGTCACGTATTCGTGGAGTCGATGATTTGTGACAAGCGGTTGCCAACTCAGAGCTGGATGCGCAGGCACTTCCGCGACGATCACTCCATTGGCAGTGACGAGCATGAGACCTGCGTATGCGGAACAAACATGCAAGAGCACGAAGCACTGGAGAAACATTTTTTCCAGCACTCCATGCAGAATTATACATCAGCGGTGAAGCCAGGAACCGTGGCCTCCGAGTGCAAGCCGAGAGAAATGCCCAAAGTTTGTGATAGTTGCGGCAAAGGTTTTTGGCTGGAGACTTGTCTGGAAATTCATTTACGGGGATGTACCAAAGCGATCGAAGATCCGCCAGATCCAGTAGCTCTGCAAGCATTCTCACGACGTTCGAATGACAAACGGCCAAAGAATCCTAATGAATTTGTTTGCCGCGTTTGCTGGGCCCAGTTTTCAACGGAATCGGCACTCGCTAACCACGTGCAGTTCTATGCGACACCGATGCAATGGCGTTGCGAAGTATGCGGAACAAATTTCAACGCGCAGAGTTCGTTAGAAGCTCATACACGCGATACTCACACTTATGACACTGCCCACCAAAACAGCTGGTTCTGCACAATTTGCGATCAAGGTTTCGAAAAGAAAATATATCGGCGCATACACATAGCGCACGTACATGGTGACAAGTGTCCGGTTTCAACGTCAACCAAACAAACGAATAATCATCAACGCGCGCATGCCAACGGCTCTGATTTCAATGACATTAGTCGAAAATGCCACATTTGTAATCTTCAGTTTGTCAGCCGAAAACGTTTCCTGGAACATTGCAATTATTACAAGAACGGAGAAAACATTGTCTGCAAAATTTGCGACCAATCATTCAGAGGTCAGTACAATGCACATCGTCACTACAAATTGTGCCATTATCCTGCAAATATCCGACAAACTTATCAGCACAAGTGTCCGATTTGTAAAGAAGCCTTCGCATTCAAAGTTCATCTGAAAGCGCACGGTAAACATGTTCATGGCAAGAGTATTCATGGAATAAATCTGATGAGAAAGCGAAGTGACGGCATTCGGCAAAACGGAAAAGCGGATGACGGTTCTGCGGAGTCGTCCGTGCTGGAAATGGCGCGATATCACATGTGTGCTGTTTGCGAGGTCAGCTTTCCTGATCTCGACTTATTGACTGCTCATCAGTTGGACCACGAGATTAACGGAAAGTATGTCTGTCTACGTTGCGGTAAACGATGCAGTACATCCACGTTGCTCCTGGATCATTTGTCATTGAATCACTCGACCACCATCAGTGAAAGTGTCGTCAAGTGTGGAAGGTGCGACGAATTATTTCTAACCCCGTCACAATGGCTATCGCACATCAAGCATTGTCACTCGTCCGATGTGATCCAACCTTCCGAATTATATCTCGAAGCCCACATCAATTTTCCTAACAGAATCGAAGTGAGCGAGTTTAGAAAGTTATCGGGGGATAATAGAACGTCCAACGTGACTTCCTCGGGGCAACTATCGACGCGTAGCAATGGAATGCATTCACGTTCGCCCTTGAACCGTTCTAAAAAGAAAAGGAATAGGAGAAGACCAAGTGCGGGACCTCCGAAGAAATTCTTCATTCGCCAAACCTTGTACCGTTGCGAAGTCTGCCCGTCTGTATTCAATAGTGAAATTTTATTGGTGTCGCACAGAAACGATGTTCATAACATCACATCCGATGCTACGCAAGTGAATACGCTCGTCGTCATGACTCAGCTCGATGACGTACATATCGTCAATCCGATGCCCATGGGACATTTAATTCCACTGACAAAGGAATACTTTGACCAGATGGTTCAAGGAACATGCAACGATGATGCGTCCAAGATGATCAGTCGATCTTCCGACTCCGATTCCCCGGACCCACTGAAATGCGAACCTTGTGGCTTTGTTTTTCCCACCTTCAAAATGTTGATGCACCATAACAATTTGGTGCACAGTGAATCGTTCCCAAATATCAAGTGCAGCGATGTCGGCCACCGGATGAATCCCTTGCCATCAACAATGAATGATGCTACAGGACACAATCCACCATTGGTAGACAGTTTGCCAATACTTCGAGGCCCGCAAACACTTGGAGTAAACGTCGATCAACAGCAATCAAGCATCATTATGCAAAGTGTATCAATGCCAATGCTCATGGCTGAACCAGCCATGATTATGAATGGTACGGATGAGTCGACGCCCTGTATGCAAGATAAGCAAACCAAAAGTTTCTTTGTCCATTCTGATGGGACTGGTACCGATATCACAAAATTGAGCACATGGTCCATCACTACAACGATGGATAATGAAGACGAGAACAACGGGCTGAAGAAGAGTAATTTCAAAACAGCGGAATGTCAAGTCGTGCCGAAACGCATAAAACAAGAACCTGCAGACTGA
- Protein Sequence
- MPRNEKKVVLREAGNDKTAEQVVARTTPSQKNANKIQNSAKKCKRKRSKKVIPVEEPLKHLQHLKKVKIHNRFQCEICFLEFENYFMLRGHNRMFGKPRFPCDTCGTKFASQRQLRFHIEHAHAAISIPGYSHRCSICNQVFRDTSLRHAHIFHNHERDQRPKLSLPSPTQPTHEESGRKQILKFDTKSANKNDCSTPDTKWVESYGSMKSELDFVKNKFEADGVKIRGDGEPLEKLGNREKLQMVENKFNVNGVKTQRDSKSLGKLETHMDHDVSSYDTHRLDNELRIKYACKPCRVVLTKLSEKIISPFCCEFCKISFPSEELRDNHVTDSHVFVESMICDKRLPTQSWMRRHFRDDHSIGSDEHETCVCGTNMQEHEALEKHFFQHSMQNYTSAVKPGTVASECKPREMPKVCDSCGKGFWLETCLEIHLRGCTKAIEDPPDPVALQAFSRRSNDKRPKNPNEFVCRVCWAQFSTESALANHVQFYATPMQWRCEVCGTNFNAQSSLEAHTRDTHTYDTAHQNSWFCTICDQGFEKKIYRRIHIAHVHGDKCPVSTSTKQTNNHQRAHANGSDFNDISRKCHICNLQFVSRKRFLEHCNYYKNGENIVCKICDQSFRGQYNAHRHYKLCHYPANIRQTYQHKCPICKEAFAFKVHLKAHGKHVHGKSIHGINLMRKRSDGIRQNGKADDGSAESSVLEMARYHMCAVCEVSFPDLDLLTAHQLDHEINGKYVCLRCGKRCSTSTLLLDHLSLNHSTTISESVVKCGRCDELFLTPSQWLSHIKHCHSSDVIQPSELYLEAHINFPNRIEVSEFRKLSGDNRTSNVTSSGQLSTRSNGMHSRSPLNRSKKKRNRRRPSAGPPKKFFIRQTLYRCEVCPSVFNSEILLVSHRNDVHNITSDATQVNTLVVMTQLDDVHIVNPMPMGHLIPLTKEYFDQMVQGTCNDDASKMISRSSDSDSPDPLKCEPCGFVFPTFKMLMHHNNLVHSESFPNIKCSDVGHRMNPLPSTMNDATGHNPPLVDSLPILRGPQTLGVNVDQQQSSIIMQSVSMPMLMAEPAMIMNGTDESTPCMQDKQTKSFFVHSDGTGTDITKLSTWSITTTMDNEDENNGLKKSNFKTAECQVVPKRIKQEPAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -