Hdid000322.1
Basic Information
- Insect
- Hyposoter didymator
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold128243:3260317-3268266[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0031 0.26 11.7 0.4 1 23 135 159 135 159 0.98 2 9 1.2e-05 0.00099 19.3 3.1 1 23 165 189 165 189 0.98 3 9 1 89 3.7 1.3 1 23 196 219 196 219 0.91 4 9 0.0047 0.4 11.1 4.1 2 23 225 246 224 246 0.96 5 9 0.00065 0.056 13.8 1.5 1 23 252 274 252 274 0.98 6 9 0.00037 0.031 14.6 0.1 1 23 280 305 280 305 0.94 7 9 6.4e-05 0.0055 17.0 3.9 2 23 310 331 309 331 0.91 8 9 0.02 1.7 9.1 0.2 3 23 340 363 338 363 0.93 9 9 0.0002 0.017 15.4 1.9 1 23 368 391 368 391 0.97
Sequence Information
- Coding Sequence
- ATGGAGCAAACTCAGGGAAGAGGGTTGGCATGGCAAACTACCCGCTCGATAAAGCGGAACTCTTCTACATCCTCGGGAGTTGACCGCTACGAAACAGCGCCAAATGACCTAACTGCGGCAGACATGCCTCGTCGTCCGTCTCGTCTACAGCAGTGTTTACACGTCTATTGGAAATTTTGTGCTTATCTGGCAGATCTGGCTTATCTCCTGGCTCATCGATGTACCAGGAGTTCGGGCGATTCACCTCGATTGGATGTGAATAGAGAAACAAACAGAATGGGCAGGGCTGATGATAAAGAGGGCGAAGCCTTATCGTCCGAAGCAGACGATGACAAGGACAAAAACTATTCGGATAAAGATCCTTCTGACACCGAAGACCAGGATGTGGAATCAAAAAAAAAGTACAAGTGCACCGAGCCTGGCTGCACTGCCAGATTTCTGCGACCTTCGCGTCTAACTTGGCATCTTCGCAAACACAACGACGAAAGACCTTACAAGTGCAGTATAAAGGGATGTACACGGGCGTATACCAATTCCTCACATTTGAAACGCCATGAGAATACTCACAAGCCCATAACAACAACGTACACATGCAGCGAATGTTTGCTAGAAGTCGGCAGTCTGTTCAGTCTCAAGCGTCATTGCAAAATGATCCACGATCCAAAGAGACTGACCTGCGCTGACTGCGGAGCAAAGTTTCGCAAAAAACACTGTTACAACGAGCATCTCTCGATGCACGCTGGCATTTCCATGTACAAGTGCGAAGTTTGCCAAGTGGAATGTCCGACTCTTAGACTTTTGAAGAAGCATCAGCTCTCGCATGACAAAAAGAAAACTTATGCCTGCAAAGCACCCAGCTGTACAAAGGTTTTCGACAAATGGTCCAAATTAGCCAAGCATGTGGAAACCGACCATCAGTTTGAACAAAAGTGCAACAAGTGTGAGAAGAGTTTCAAGACGAAGCGGCAGTTACAAAATCATGCGTTTTTTCACAAGAAAGAAGGAATCTTCTCGCCATGCCCGTATCCAAATTGTCCGCGATTTTACGCCCACGCCAGAAATTTGGACGAACACGTACAGTCGTTTCACGAGGGACGCAGATTTTATTGTGACACCTGTGGCTTTGAACTCACATCGAAAGCCTCATTGATAAGGCACATACAAAAGTGCCACGGGGATCTAGTGGCGCCTCCAAAAAAGTCGACGAGGTTGAGGAAACGTCGCAAGGACGATGGTCTGGCAAAAACCAGTATGGCGATCAGGCTCACCGGAATGAAAATTCCACTGGAATTGGAGAAGGACGTGCTTAAGAGAAAACCGAAAATCGATTTGCAAAGTCCTTTCGAAGCGCCAGGAGGCTCAAGTGCCAAATCCTCAATGTCAACCGACGTCGAGGGCAGCCAAATGGGAACGATTTCACAAAAAGCTCTTCCGGAGAAAGATGCAGTAGGGTTTGACAGTGGGACTCAATGTTTCGTATCTTTGGAAAGAATCTGTCACTCAAAAGACCCAAAAGAAATACAGAACAACCGAATTCGCGTTGAGAAGAACTTTTCCGAATCGATAATCCACGAAGCGATCGAAGAGACGGAAATACAAGCAGAAAATGATCCTCGACAACCGGAAATCTCCGGAGCAATAGAAAACGAGGAAACAAATGTTTCGACGAATTCTCCAAAACCAACAATTCCTGAAGATATGGAAGTGGACGAAAACACAGTCGAGGACGATTCCTCGAGAGCGGTAACAGCTGAACAGAAGAAAGAGGAGAAAACGAGTGAGAAACAAGATTTCTGCGTGCCTGAGCAAACGGACGAGGAACTTTTGTCGTCGGTGGATTGTTTTTTAAAATCAGGCGAACTAATCGTCCTGCAAAGAAGCAGTGAAGACTTTTCAGAAGTCGAGGAAGATAATTCCGAACTGTTGACGCTGGCTGACCAGTTGCTGCAACAAGATGCGAATATCGTTGCAGATTCTATTGTGGAACAGCCTTTGCTAATCTACGAGGAGACGAACTTCGTCGGGTCGACAAACGATTCATCGGAAATAGGAAAAATTGACATTTCCATAAAACCTCGCACCGCCTCCTTTGAATTCCCTGAAAAAATATTCCCAGTCGACTCAAAAACTGGTTTTTAA
- Protein Sequence
- MEQTQGRGLAWQTTRSIKRNSSTSSGVDRYETAPNDLTAADMPRRPSRLQQCLHVYWKFCAYLADLAYLLAHRCTRSSGDSPRLDVNRETNRMGRADDKEGEALSSEADDDKDKNYSDKDPSDTEDQDVESKKKYKCTEPGCTARFLRPSRLTWHLRKHNDERPYKCSIKGCTRAYTNSSHLKRHENTHKPITTTYTCSECLLEVGSLFSLKRHCKMIHDPKRLTCADCGAKFRKKHCYNEHLSMHAGISMYKCEVCQVECPTLRLLKKHQLSHDKKKTYACKAPSCTKVFDKWSKLAKHVETDHQFEQKCNKCEKSFKTKRQLQNHAFFHKKEGIFSPCPYPNCPRFYAHARNLDEHVQSFHEGRRFYCDTCGFELTSKASLIRHIQKCHGDLVAPPKKSTRLRKRRKDDGLAKTSMAIRLTGMKIPLELEKDVLKRKPKIDLQSPFEAPGGSSAKSSMSTDVEGSQMGTISQKALPEKDAVGFDSGTQCFVSLERICHSKDPKEIQNNRIRVEKNFSESIIHEAIEETEIQAENDPRQPEISGAIENEETNVSTNSPKPTIPEDMEVDENTVEDDSSRAVTAEQKKEEKTSEKQDFCVPEQTDEELLSSVDCFLKSGELIVLQRSSEDFSEVEEDNSELLTLADQLLQQDANIVADSIVEQPLLIYEETNFVGSTNDSSEIGKIDISIKPRTASFEFPEKIFPVDSKTGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -