Hdid011134.1
Basic Information
- Insect
- Hyposoter didymator
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold351:802014-808203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.91 78 3.9 0.1 2 23 252 273 251 273 0.94 2 13 0.00013 0.011 16.1 3.5 3 23 282 303 281 303 0.96 3 13 4.8e-07 4.1e-05 23.7 2.1 1 23 429 451 429 451 0.99 4 13 0.02 1.7 9.1 0.0 1 19 455 473 455 473 0.97 5 13 0.00048 0.041 14.2 3.7 1 23 485 507 485 507 0.98 6 13 5.2e-06 0.00044 20.4 4.8 1 23 536 558 536 558 0.96 7 13 2.5e-05 0.0021 18.3 1.4 3 23 581 601 579 601 0.97 8 13 0.13 11 6.5 2.9 1 23 606 628 606 628 0.97 9 13 0.00042 0.036 14.4 0.1 2 23 634 655 633 655 0.95 10 13 0.0035 0.3 11.5 8.7 1 23 660 683 660 683 0.96 11 13 0.0019 0.16 12.4 1.2 1 23 689 711 689 711 0.98 12 13 0.00084 0.072 13.5 7.5 1 23 717 740 717 740 0.96 13 13 0.12 10 6.7 4.7 1 23 745 768 745 768 0.95
Sequence Information
- Coding Sequence
- ATGCCGCCGCTGAAGAGACTTGTGACTATTCCAGACGCATCACTCTCAAGAAACGACGCAGAAACTATCGAGAAAAACACCGACGAACCTTTATTCACAGTTTGCAGCATCTGCGGACAGCGGCATGCGACAACCAACTGCCAATTTCTTCTCGACCTCAAATATGTGAAGGACGAGCCCCTGTTGTCCAGAGCAAGGTTGACGCTGCCAAAATCCCTGGAAATCACAAAAATGGCAGACGGCTCTTTGACGGTGACAACAAAATGTGATTTTCCACAAGGAACGACCTTCGGCCCGCTGGAGGCTCAGCGAGACTTTACCATGAACCCCATGAACGATTTCCCCATAAAAATCTTTGGAACCAGTCCCACGGAGACTTTTCATCTCGACCGTTCCAATCAAGACGCTTCCAATTGGATGTGCTTCGTCTCTCCGGCGTCAAACTCTTCGGACCAGAATCTCGTCTGCCACCAAATGTACAGAGAAGTTTATTACACGGCGATGAGATTCATAGCGTCCGGCGAAGAATTGAGAGTTTGGTACGCGCCGCATTACGCTTCCCAAATGAAAATGCCGCTGCTCAACAAAGATTTCGCCATTTTCCATGATCCCGAAGCGACGGAGAATAACGAGATCGATTCTTTATACGAAAACGACGTAATACTTTCGGAAAATTCACAAAAAAATATTGAAGAAATTGTGCAAACTTTGCCGGCCGAGCAACTGGGAGCCCGGGGCGACAAAAGCAGCTGGAACTGTACGATCTGCTCGTTCGTGATTAATTCAGTGATCGAGTTTGCCAAGCACTTGATGGAACATTACAAACCGTTGACTGGAGTATTTTGCGAGATTTGTAACCGGAAATTCCACAGACCGTCGGCGTTGCAGAAACACAGAAAATTGAAACATCCCGAAGGACGACGAACAAACAACGACGAAATGCTGGAAAAGTTGAAAGCTGATAAATCATTGACAGAATGCAATAGTTTACTGGCCCCAGGGATCGAGGCAGAAAGAGAGAATCCAAACGAACTCCTAGACGCCCATTCGATCAGCGTCAACGATCTCCTGCAAAACAACGCGACGTTGCTCGAGAATTCCTCGTTGAAATCAATCCTCGAAAGCCAATGCTTGAACCTGAGCCTCGAAGCGATAACAGACTCGATGCTCTCGGACAATATAAACGGCGCCGATTCCGTTAAATTCAACGTCGAGGAATTGGCCTCAGACTTTTTGGACATAAACACCGTCGATGTGGAAAATTTTGATCGCAGAATCGTCAACTTTCAGTGCGACATTTGCGAGAAAAAATTTACCAAGCCCGATTATCTCTATCGACACTTGAGAAAACACACCGGAGAGTTTGTCTGTCCAAATTGTCTCGGTGTTTTTGCGAGAAAAGAAAATTTGGTTTCGCATCCGTGTCCTTCGCAAAAGTTTGCTCAGAGGAAATACGAGTGTTCCTACTGCCAAAAGCTCTTCTTAACGAAGAAATACCTGAAGCGTCATATGGACAAGCACACCGATAGCAACATTTGCAAATGGTGCAGAAACTTGTTTCCTTCGAGGCTGGAAATGGAGGCTCACGAGTGCCAAGCGCCGAGGCACGTTTGTCCTCAGTGTGGCAAGCGATTCGTTCACCGCGAACATCTCAATCGACACGCCAAATTACACGCGAATCCTAAACCGAGGCTGAAGAAAATAAAGAAAAAAAAAAGTTGCGAGGAAAAACGGAGCATTTGCGAAAAGTGCGGAGATGTTTTTAAAAATCCTCATAGCTTGAAACAACATTTACGATCCCACGGAGAAAGAAAATTCGAGTGTGACATTTGCCACAGCAAATTCCACAGGATCGGAGTTTTGCAACAACACAAATCCATTCACCAAAGTATTCAGATCCCTTGTCAAATTTGCGGCAAAAAACTCAAAAGCAAAAAAGCCTTGAGCGTTCACGTGCTTTTACATGGAAACAGAAAATTTCACTGCGAAAAGTGTGACAAAAGTTTTTTTCAAAGGTGCAATTATTTGAAGCACTACAGACAAATGCACAGTGACAAGATATTGCACAAGTGTGTTAATTGTCCGGCAGAGTTTACGAGCGAATTGAGTTTCAATAAGCACATGGAGAGTCACATAAAACCGACGGAGCACGCGTGCAATTCTTGTCACAAGATTTTCCATCGGGAATATCAATTGAAGCGGCACGTCCGAACGAACCACAGTGGGATCGTGTACCGTTGTCCTTTTTGCAAAATGACGGCTCGCTACCGTCACAGCATGAGAAGGCATTTCGAGCGTCAGCACAAAGGTCTCAGCAGCGAGTGGAGCAGAGTGGGTTTCCTAAACGATTTGATGGAAAAGTCTCTGTTGACGGAGCGACCGTCCGGACCGGATTTTGGGGTTGCGATCACTCTGGAGGATAATCTGCGCGACAAGTTTGCAAAAAAGGTGGACGACGAATTGCGATCAAATTCGCAGAACGATATCCCAGAAACTCAACGAACCTCGAGAATGACTGAATTAACGTCGAGCGACGTTCCCCAATTGAGTATCAGCGACAACGAAGCAAATCTGGCGGAATCGGTGCTCGGCAACGCGTATATATTCGGCGAGGATGCCGGCGACATAATGTTTTACGTTCTAGACAATGCTCCAGTCACCAGCGAATTCTAA
- Protein Sequence
- MPPLKRLVTIPDASLSRNDAETIEKNTDEPLFTVCSICGQRHATTNCQFLLDLKYVKDEPLLSRARLTLPKSLEITKMADGSLTVTTKCDFPQGTTFGPLEAQRDFTMNPMNDFPIKIFGTSPTETFHLDRSNQDASNWMCFVSPASNSSDQNLVCHQMYREVYYTAMRFIASGEELRVWYAPHYASQMKMPLLNKDFAIFHDPEATENNEIDSLYENDVILSENSQKNIEEIVQTLPAEQLGARGDKSSWNCTICSFVINSVIEFAKHLMEHYKPLTGVFCEICNRKFHRPSALQKHRKLKHPEGRRTNNDEMLEKLKADKSLTECNSLLAPGIEAERENPNELLDAHSISVNDLLQNNATLLENSSLKSILESQCLNLSLEAITDSMLSDNINGADSVKFNVEELASDFLDINTVDVENFDRRIVNFQCDICEKKFTKPDYLYRHLRKHTGEFVCPNCLGVFARKENLVSHPCPSQKFAQRKYECSYCQKLFLTKKYLKRHMDKHTDSNICKWCRNLFPSRLEMEAHECQAPRHVCPQCGKRFVHREHLNRHAKLHANPKPRLKKIKKKKSCEEKRSICEKCGDVFKNPHSLKQHLRSHGERKFECDICHSKFHRIGVLQQHKSIHQSIQIPCQICGKKLKSKKALSVHVLLHGNRKFHCEKCDKSFFQRCNYLKHYRQMHSDKILHKCVNCPAEFTSELSFNKHMESHIKPTEHACNSCHKIFHREYQLKRHVRTNHSGIVYRCPFCKMTARYRHSMRRHFERQHKGLSSEWSRVGFLNDLMEKSLLTERPSGPDFGVAITLEDNLRDKFAKKVDDELRSNSQNDIPETQRTSRMTELTSSDVPQLSISDNEANLAESVLGNAYIFGEDAGDIMFYVLDNAPVTSEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439738; iTF_00829762;
- 90% Identity
- -
- 80% Identity
- -