Basic Information

Insect: Hyposoter didymator
Gene Symbol: prdm10
Assembly: None
Location: scaffold4:592402-600066[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0076 0.65 10.5 0.5 2 23 489 510 488 510 0.95

2 14 2.6e-08 2.2e-06 27.6 1.5 1 23 544 566 544 566 0.98

3 14 0.0039 0.33 11.4 4.0 1 23 574 597 574 597 0.98

4 14 0.03 2.5 8.6 0.4 2 23 615 636 614 636 0.94

5 14 3.2e-05 0.0028 17.9 0.2 2 23 649 670 648 670 0.97

6 14 0.00057 0.049 14.0 3.8 1 23 688 710 688 710 0.97

7 14 0.0057 0.49 10.8 2.1 2 23 719 740 718 740 0.96

8 14 0.0058 0.5 10.8 0.1 1 23 747 769 747 769 0.98

9 14 0.00019 0.016 15.5 1.4 1 23 776 798 776 799 0.95

10 14 0.016 1.3 9.5 2.2 1 23 804 826 804 826 0.98

11 14 2.1e-05 0.0018 18.5 2.7 1 23 832 855 832 855 0.97

12 14 0.0015 0.13 12.7 1.7 1 23 888 911 888 911 0.97

13 14 0.00011 0.0098 16.2 2.0 1 23 933 956 933 956 0.95

14 14 0.0034 0.29 11.6 3.4 3 23 994 1015 994 1015 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0076	0.65	10.5	0.5	2	23	489	510	488	510	0.95
2	14	2.6e-08	2.2e-06	27.6	1.5	1	23	544	566	544	566	0.98
3	14	0.0039	0.33	11.4	4.0	1	23	574	597	574	597	0.98
4	14	0.03	2.5	8.6	0.4	2	23	615	636	614	636	0.94
5	14	3.2e-05	0.0028	17.9	0.2	2	23	649	670	648	670	0.97
6	14	0.00057	0.049	14.0	3.8	1	23	688	710	688	710	0.97
7	14	0.0057	0.49	10.8	2.1	2	23	719	740	718	740	0.96
8	14	0.0058	0.5	10.8	0.1	1	23	747	769	747	769	0.98
9	14	0.00019	0.016	15.5	1.4	1	23	776	798	776	799	0.95
10	14	0.016	1.3	9.5	2.2	1	23	804	826	804	826	0.98
11	14	2.1e-05	0.0018	18.5	2.7	1	23	832	855	832	855	0.97
12	14	0.0015	0.13	12.7	1.7	1	23	888	911	888	911	0.97
13	14	0.00011	0.0098	16.2	2.0	1	23	933	956	933	956	0.95
14	14	0.0034	0.29	11.6	3.4	3	23	994	1015	994	1015	0.98

Sequence Information

Coding Sequence: ATGGATTCGAGGGGCCCTCCCGAGGGGGGCCCTGTCGATTCAATCGAGATGTCGATTTTGGACAACAAAACTTCAGAAATTTCGGAAAATTGGCCAACAAATAATCTTCTCGCATCGACACTCGGTGATCCTTCCCGAAAATCTACCAACAGGCTGTTGTTTTTGACAGTGGGATATCTCGAGGATCAATCTCGCGATTACTCAAGAATGTTTCCGGCTTACGAGCAAGTGCCGTTCTCCCCGCGGGCGGCGTCGCCGCTCTCAGATTTTGAGCACCGAGTCAGTCCTTTGGATCCGAATATGAGTTCAGCCGCTCGTTATTCGCCAACTCCGGTTCCTCTGCCGCCTCTGCCGTTTCACAATTCGGTAGTTGTTCTTCAGGGCCCGCCATCTCCGCTCGTTGTACAACCAGAAAGCGAAACGAATGTCCCTGCAACTATCAATTTCGTTGCGGATCAGGCCAGAGACGAAACTTCCGAACAGAGCCATGTCGTCAATGATTTTGTCAACGCTGCACACGAGGAGGAATTGGTGACCGGCGTCGACGAGGAATTGATTTTGATGCCCGAAGCAACGTCGGAACTGGAAGCTTCGGCAGCGCCTCTGATGCTGGCAGGTATTCCTGGCACGGAGTTTGCTTTGACACGAGATTTCCTGGTGATGCAGGACGATCAAATAAACGTGATGAGTACACTGAGAAATCAGGAAATCAATGTGGAACCGACGGTGGTGGTTACAGAGCCTATGGCCGAAGAGAATGGCAACGAAATGGAGTTGCCAGTTGCCTCGATTATCGAAAACATTGCAATCGTGGAAGAGACGGAAAAGCCTGTTGAGAAGAACGAGGAACCTGAGGAAAGAATTGTCAGACGTTCGCGGCGTCAAATAAACGACAAAAAAACATTTTCGTGCGAACAATGCGACTCTGTTTGCCACAAAACTGGCGAATGCACGATGAACAACGTACGCACCATCGCTGATCAACCCGTACCGTCCAGAGCCATTGCTACACTTCCAGGCTCTTATCTATCCATCAATAAATTACCAGGATCAAATAATTCATCCGGAAATCCGAATTTTGGAGTTTTTGCTAAAAGAAATATTCGATCCCGAACGCAATTTGGACCGATCGAGGGAATTCTCTGCCCTTACGATGGCACACCTTTCGAAAACTCTTTACCACTCATCTACGAAACTGAGAATGGAGAATTCTTGAAAATCGACGTTTCGAATGAAAATGCCTCGAATTGGATGCGATTCGTCAGACCAGCCACAACGTACAAAGAACAAAATCTCGAAATTTGCCAACAAGCCGATGGAATCGTGTTTTTAACCACGAGAAATATTTTGCCGAAGGAGGAATTGCGGGCTGGGCCTAATCCTGAATACGCTGTTCGCAGAAACTTGAAAATTCTCGAGGCTGAAATGAAGCACGAAAAAGAATTGACTGACTCCAATTCGTGGCCGTGTTTCGAGTGCAATCAGCGCTTTTTGACATCTGCGAAGCTTCAGAAGCACTTGACGATCCACGACAACCCAAAAGTTGAGCCAAAATCGAGGATCAAGCGTCGGAAAATGCCTGTACCCACAAACAAACTGTTCAAAGTGGTGGACGGTGAAAATGCATTGTACAAGTGTCCGCACTGTCCGAAGGTATTTCCGCGGAGTTACAGTCTGAAGAGACATTTGTTGATTCATCCAGGAGCAAAATCGCCTCGTTACGAGTGTAGCACGTGCGGTGAAAACTTTTTGCACCCCCACAACCGAAATCGGCATATGAAAATATTCCACGGTGATGGGACAAAGGAAAAAGAGAATTCTCGTCAGAATTCAACAGAGTGGAAATGCGCCACGTGCAATTTAATTTTCAGTAAATCGAATCTATTGAGCCTGCACAGTTTGTCACACTCGAGCGATGTTTGCACGGACCAAAACGTCGAAGATTCTTGTCCTCAATGCAACGAAATCTTCAAAACTCGCGATGAGCTTGTTCAACATGTGATGAAACATGCTCGTCGTTTACAATTACCAAAATCAACGAAAATCACACCTCTCGCCTCACACAAATGCAACATGTGCTACAAACGCTTCGCCACCAAAGTGCGATTACAACAGCACTATTTGGTGCACGGTGCCGAGGACCAAAAACCACTGCCATGCGACATTTGCTTCAAACGTTTTATGAACAACTCGGCTCTGTCCTGCCATTTGAAAACTCACAGAGAGGACAAACAAATATTCGAATGCCCGATGTGCCGCGAACTATTCAATCAAGTTTTAATGCTCAAAGACCATATCGAAACACATCGAAACGAGGACGAGACGTTCAGCTGTCCCCAATGTCCAAGGACCTTTGTAAAATATTCGGTTATTCGTAAACACATAAGAGCTCATCATAGCGAACGTAAGCACAAGTGTCAATTTTGCGCAATGCGTTTTCCCACCGTCGACAAGTTGCGGATGCATTTGCTGCGTCATTCTGATCACAGAGAATTCCGATGCGCGAATTGCGAGAAACAGTTCAAACGGAAGGACAAACTCAAAGAGCACATGACGAGAATGCACGATTCTCAGAGAACGAAAAGTGATCGGACAGCCCAGAATAATCAGATCAAAAAATTCGTGCCGAAGGTTAATCCGACGGACTACAATCGATTCGTTTACAAGTGTCATCAATGCCTGGTCGGTTTCAAGAGGCGAGGAATGCTCGTTAATCATTTGGCGAAACGCCATCCCGATGTTTCGCCCGAATCGGTGCCCGAATTGAATTTACCGATTTTGCGACAGACTCGGGATTATTATTGCCAATACTGCGACAAAGTGTACAAAAGCAGCAGCAAAAGAAAAGCTCACATAGTGAAGAATCATCCAGGAGCAGCATTGCCGCCGAGCAATCGTCACAAAGAGGCAGATTCGACGGGTTTGCCAAATTTGAGTTTCAGTCAAACGGTCGGCAGCGTGACAACGACGCCTCAGGGTTGTCAATGGTGTCACAAGCAATACGCGAGCAAAGCGAAACTTTTGCAGCATCAGCGTAAGAAACATTCGAGTCTGATGGAGCCAGCGGACAAAGTGCCCCGTGCACGAAACCGACCACCGCGCGAACATCATACGGAATCGTCGAATCTTGTTGAGGCGAATTTTCTCATGAGCGATTATTTGCAGAGCTGCGAAATCGAGACCGATTTTTTAAAGCCTAAAATCATCAAAATCACCGCTACTGACGTTGACCTCATCGGCACTGGCCTTGAATTAAACGGTCAACAACAATTTGTACGCATGCGTGATATACGTTGA
Protein Sequence: MDSRGPPEGGPVDSIEMSILDNKTSEISENWPTNNLLASTLGDPSRKSTNRLLFLTVGYLEDQSRDYSRMFPAYEQVPFSPRAASPLSDFEHRVSPLDPNMSSAARYSPTPVPLPPLPFHNSVVVLQGPPSPLVVQPESETNVPATINFVADQARDETSEQSHVVNDFVNAAHEEELVTGVDEELILMPEATSELEASAAPLMLAGIPGTEFALTRDFLVMQDDQINVMSTLRNQEINVEPTVVVTEPMAEENGNEMELPVASIIENIAIVEETEKPVEKNEEPEERIVRRSRRQINDKKTFSCEQCDSVCHKTGECTMNNVRTIADQPVPSRAIATLPGSYLSINKLPGSNNSSGNPNFGVFAKRNIRSRTQFGPIEGILCPYDGTPFENSLPLIYETENGEFLKIDVSNENASNWMRFVRPATTYKEQNLEICQQADGIVFLTTRNILPKEELRAGPNPEYAVRRNLKILEAEMKHEKELTDSNSWPCFECNQRFLTSAKLQKHLTIHDNPKVEPKSRIKRRKMPVPTNKLFKVVDGENALYKCPHCPKVFPRSYSLKRHLLIHPGAKSPRYECSTCGENFLHPHNRNRHMKIFHGDGTKEKENSRQNSTEWKCATCNLIFSKSNLLSLHSLSHSSDVCTDQNVEDSCPQCNEIFKTRDELVQHVMKHARRLQLPKSTKITPLASHKCNMCYKRFATKVRLQQHYLVHGAEDQKPLPCDICFKRFMNNSALSCHLKTHREDKQIFECPMCRELFNQVLMLKDHIETHRNEDETFSCPQCPRTFVKYSVIRKHIRAHHSERKHKCQFCAMRFPTVDKLRMHLLRHSDHREFRCANCEKQFKRKDKLKEHMTRMHDSQRTKSDRTAQNNQIKKFVPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVSPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRHKEADSTGLPNLSFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADKVPRARNRPPREHHTESSNLVEANFLMSDYLQSCEIETDFLKPKIIKITATDVDLIGTGLELNGQQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057116;
90% Identity: iTF_00439681;
80% Identity: -