Basic Information

Insect: Hyposoter didymator
Gene Symbol: -
Assembly: None
Location: scaffold351:4999003-5002803[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.02 1.7 9.1 0.6 2 23 150 171 149 171 0.97

2 14 1.5e-05 0.0013 18.9 2.0 2 23 183 204 183 204 0.98

3 14 4.8e-05 0.0041 17.4 2.0 2 23 211 232 210 232 0.97

4 14 0.00017 0.014 15.7 1.4 2 23 305 326 304 326 0.95

5 14 8.5e-06 0.00072 19.7 0.6 1 23 365 387 365 387 0.97

6 14 7.9e-07 6.7e-05 23.0 1.8 1 23 393 415 393 415 0.96

7 14 3e-05 0.0026 18.0 0.6 1 23 421 443 421 443 0.98

8 14 3e-05 0.0026 18.0 5.3 1 23 449 471 449 471 0.97

9 14 7.7e-08 6.6e-06 26.2 1.0 1 23 476 498 476 498 0.97

10 14 8.5e-05 0.0072 16.6 1.0 1 23 504 526 504 526 0.97

11 14 2.9e-07 2.5e-05 24.3 3.8 1 23 532 554 532 554 0.96

12 14 2.3e-05 0.002 18.4 1.3 1 23 560 582 560 582 0.98

13 14 1.8e-05 0.0015 18.7 2.6 1 21 588 608 588 610 0.91

14 14 0.00058 0.05 14.0 1.8 1 23 616 639 616 639 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.02	1.7	9.1	0.6	2	23	150	171	149	171	0.97
2	14	1.5e-05	0.0013	18.9	2.0	2	23	183	204	183	204	0.98
3	14	4.8e-05	0.0041	17.4	2.0	2	23	211	232	210	232	0.97
4	14	0.00017	0.014	15.7	1.4	2	23	305	326	304	326	0.95
5	14	8.5e-06	0.00072	19.7	0.6	1	23	365	387	365	387	0.97
6	14	7.9e-07	6.7e-05	23.0	1.8	1	23	393	415	393	415	0.96
7	14	3e-05	0.0026	18.0	0.6	1	23	421	443	421	443	0.98
8	14	3e-05	0.0026	18.0	5.3	1	23	449	471	449	471	0.97
9	14	7.7e-08	6.6e-06	26.2	1.0	1	23	476	498	476	498	0.97
10	14	8.5e-05	0.0072	16.6	1.0	1	23	504	526	504	526	0.97
11	14	2.9e-07	2.5e-05	24.3	3.8	1	23	532	554	532	554	0.96
12	14	2.3e-05	0.002	18.4	1.3	1	23	560	582	560	582	0.98
13	14	1.8e-05	0.0015	18.7	2.6	1	21	588	608	588	610	0.91
14	14	0.00058	0.05	14.0	1.8	1	23	616	639	616	639	0.95

Sequence Information

Coding Sequence: ATGGATGCTCTATCTACGAGCAGTCGGGTTATGGATGAAAACATCGTCGGTGTGGAGCTTAAGGAAGAAACGGACGGGAGATTCGGTCAGACGTACATCGAAGATATCTGTCCAGGCACTTTTGGCAAAGTTTTCCTACCGATCGACAGCCATGAAGTGGACTTTACAGATGAAATGGTCAAACTGGAGCTAGAGAGCCAATCGGGAGAACATCACATTTGGGCAGCGCAATTGGCAACGACGACTCTGTGCGAACAGGACGACTGCGGAATCCACAGAACTTCGGAGGAGAATATCGACGAGTCTGGAGAAAAGTCCGTAGAGGCGGAAGACGCGGAGAAGGAGGAGGAGGAGGATCGAAAGACCGGGGAGGAGCAGCTCGAGGATGAGCAGTCGATCGACAAACCGGATGAAGAGTCTTGCACGACCTCTAAATTCTACAAGATTCAATGTACTATTTGTAAAAAGTGGTTTTTGAACAACGACTCGATGATAACGCATTTGAGGAGCCACTGCGGTGGCGGGAATCTCCAAAACGGTGGTGAACAATGTCAAGTTTGCCAGCAAAGTTTTAATGACAATACGAGTTTGCACGCTCACATGTTGACCCACGTAGGCATGAATCCGGTCGAGTGCAACGTTTGCCAGAAGCGATTCGCGTACAAGTGGTGCCTGCGAAATCACGTGCAAACGCACGTCGGGACGAAACCGTTTGACAATTTTTCTCAGATCCCGAGTAATCTTGTGCTGGTAAATAACGAAACGGCGAATCTCGGTTTACCGATTCCCGGGGTTGGTTACACGTTCGAGAGCGTTACCGATCAAAGAAAACTGTTCGAGGATCGCGCGAGCTCCGAGGAGGAAAGGAGCAGGGAGACTAAATCAGAGAGCGAAGCTTCGAGAACGGGGCTTCGTTGCGATCTCTGTAAGTTGCGTTTCAAGGACCGGGAAAGCTTGAATCGTCACTCTCTGTCGCACATGAGCGAAGGAACGGCTTACAAATACGATATTTTCAATGGGACTCTCCGTGAGAAAGCGAAACCCGAAATAATCGATCCACGAGCAGCTCAGACGAGCTCGATGACGAAACAATTCAAATGTACGCTGTGCGAAAGGTCCTTCGGCCAACGTACGGCTCTCAACAATCACATGCTCGCTCACAGTGGCGAAAAACCACACGCGTGTAATATTTGCGAGAAAACGTATAAGCGCAAGTCCGAATTGATAAGGCACACGATGGTTCACACGGGGGAACGACCCTACGAGTGCAAAGAGTGTCTGATGACATTTCGAGAAAAAGCAAAACTGAATTCCCACATGCTTGTGCATACGGGGGAAAAGCCTCACGAATGTTACATTTGTCACAAAGCTTGCGCAAGAAAATCAGATCTGAACAGCCACATGCTTTCCCACACCGGTGGCCAATACGATTGCAAAGTTTGCGACAAAATTTTCACCCGAAAATCTGATCTCAACAGACACACTCTCATTCATACCGGAGAAAAACCGTTCGCTTGCGAGCACTGCGACATGGCTTTCCGCGAAAGGACTCGATTGAATTCCCACATGCTCGTTCACACCGGCGACAAGAGACACGCTTGTCACATTTGCGGTAAAAACTTCAGAGAAAAATCTTCCCTGAAAAAGCACATGCTCGTTCACACCGGTGATCGGCCTTACGAATGCTTCATTTGTAAAAAAACATTCACCCTCAAAACCACACTCAATAGCCACGTTCTCGTGCACTCTGGCGAACGACCCTACGAATGTGACAATTGTCCTAAATCTTTCCGCGAAAAGTCCTCCCTCCGAAAACACTCTTTTTTCCACACCAACGATCGTAATCACGAGTGCAATGTTTGCTTCAAGAAATTCACTCACAAAGCTGCTCTTGGTTCGCACGCCGCGACTGACCATCCCTCTTAA
Protein Sequence: MDALSTSSRVMDENIVGVELKEETDGRFGQTYIEDICPGTFGKVFLPIDSHEVDFTDEMVKLELESQSGEHHIWAAQLATTTLCEQDDCGIHRTSEENIDESGEKSVEAEDAEKEEEEDRKTGEEQLEDEQSIDKPDEESCTTSKFYKIQCTICKKWFLNNDSMITHLRSHCGGGNLQNGGEQCQVCQQSFNDNTSLHAHMLTHVGMNPVECNVCQKRFAYKWCLRNHVQTHVGTKPFDNFSQIPSNLVLVNNETANLGLPIPGVGYTFESVTDQRKLFEDRASSEEERSRETKSESEASRTGLRCDLCKLRFKDRESLNRHSLSHMSEGTAYKYDIFNGTLREKAKPEIIDPRAAQTSSMTKQFKCTLCERSFGQRTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACEHCDMAFRERTRLNSHMLVHTGDKRHACHICGKNFREKSSLKKHMLVHTGDRPYECFICKKTFTLKTTLNSHVLVHSGERPYECDNCPKSFREKSSLRKHSFFHTNDRNHECNVCFKKFTHKAALGSHAATDHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00265916;
90% Identity: iTF_00439665;
80% Identity: -