Hdid003253.1
Basic Information
- Insect
- Hyposoter didymator
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold25:2453784-2456872[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.2e-05 0.001 19.2 0.3 2 23 96 117 95 117 0.97 2 19 0.00033 0.028 14.7 1.2 1 23 119 142 119 142 0.95 3 19 0.017 1.5 9.3 3.8 1 23 147 170 147 170 0.94 4 19 0.00097 0.082 13.3 2.2 1 23 176 199 176 199 0.95 5 19 0.00066 0.056 13.8 1.7 2 23 206 228 205 228 0.96 6 19 0.00011 0.0093 16.2 0.5 1 23 233 255 233 255 0.96 7 19 2.3e-05 0.002 18.4 0.3 2 23 262 282 261 282 0.97 8 19 2.3e-06 0.00019 21.5 0.1 1 23 288 310 288 310 0.97 9 19 1.7e-05 0.0015 18.8 0.1 1 23 316 338 316 338 0.98 10 19 0.51 44 4.7 5.0 1 23 372 395 372 395 0.96 11 19 1e-06 8.8e-05 22.6 1.5 1 23 401 423 401 423 0.97 12 19 3.8e-05 0.0033 17.7 1.5 1 23 429 451 429 451 0.98 13 19 0.033 2.8 8.4 0.2 1 23 457 481 457 481 0.91 14 19 3e-05 0.0025 18.0 2.4 1 23 487 509 487 510 0.96 15 19 3.8e-05 0.0032 17.7 2.1 1 23 523 546 523 546 0.97 16 19 0.0026 0.22 11.9 0.1 1 23 557 579 557 579 0.95 17 19 2.3e-07 2e-05 24.6 0.7 3 23 587 607 586 607 0.97 18 19 4e-07 3.4e-05 23.9 1.5 1 23 613 635 613 635 0.98 19 19 4.9e-08 4.2e-06 26.8 1.0 1 23 641 663 641 663 0.99
Sequence Information
- Coding Sequence
- ATGGACGAACCAACGAAAAACTCGGGATCCAAAGCTCCGAGCGTTTCGGAAATCGAAATCACTTCGCGAATAAACGGATCTGTTTCGGATGCTAAAGGATTATTGATTAACGAGCATGGAAGTGGTAAATTTCCAAAGCGGAAAAAAGAGGTTCAGAGAAAAGCAGACGACGATGCTCAGGAAGGAAAATCGTCCGAGAGATCGAGAAAGAAATATTGTGGAAAAAATAATACAGGAATTAGTGAAAAAAATGATTGCACAATAAGGGACAAACGGAGAGACGTAAAGTGCGATGATTGTGGAAGAAACTTTGGAAAAAAGTCGGATTTAGTGGAGCATTTGAAACAGCATCGGCACAAGTGTGAAAATTGTGCAAAATCTTTTCGTCTCCTTCGTAACTTGAACGCCCACGTTGACAAAGTGCATCGGGTTCGATATCACGAGTGTGCCGTTTGTCATTACAAAAGCACCAACAAGGGCACACTCAAAAATCATTTCATTCGATTGCACACGAGCGATTACGAATTCGCCTGCGAGGTCTGCAGCAAAAAGTTCAAAATACGAAAAGCTCTGAATCATCACGTGAAACTCTATCACATTGACTCGGCCCCAATCGTCTGTGACGTTTGTGGCCATTACAGTAAAAATCTTCATGCTCTAAAGGCCCACATGCGATATCGACATTACAAGCCCGAATTTGTCTGTCACATTTGCAATCGTGGCATGACGACAAAAGAAAATCTCGAGCAACACATCGATTGGCACAAGACTCGAGAAAAAGTTTCGTGTCCAACGTGCGGCAAGAAATTCCGAGCTCGTGATCTCGAGACTCACACGAGAGTCCACACCGGCGTCAAACCGTTTGCTTGTCCAGTCTGCGGCAAAACCTTCCGACGTCAAACTGCCCAGGAACAACACATTCTCATTCACACGGGCAAAAAACCTTACATCTGCGACATTTGTGGGCGAGCCTTCGCCCAGAAACCTGGACTCATGGGCCACAGGAAAAAGCATCCTGGACCTTTGCCACCGTTCCCTGTTGTTTCTATCAAAAATATTATCACTCAGTCAGTGCGAGCAGGGTCTCGAGGTGGAAAGAAGTCGAGAGCTCCGCACAAGTGTGGCAAATGCAACGGACGTTTTTTCCACATGACGAAGCTCTCGGAGCACTTGAAAAACGTTCACGGTATCGAGCGTGCATTTCACTGCGACGAATGCGGCAAAGCATTCCGTAATGCGTCGAACATAAAGCGGCACAAGCTCATACACACGGGGCTGAAGAAATTCGTATGCGATATTTGCGGTTGGGCTTGCAATCAAAAGAGCAATTTGGAGTTTCATCGACGTCGTCATGTCAAGGATTACGCGTATAATTGCGAGCTTTGCCGTGACAAGGGTTTCATATCGAAGAGCGAGTACGAGGATCACATGGTGAACGTTCATGCTCAAAAAAAAATGTACAATTGCGAATTATGCTCGAGAACGTACGGTTACAAAAAAAATTTAACTGCCCATTTGCGAATCCATCATGCCGAGCTCGGCAACGAAACTGTTCCGGTTTTCAAATACAATTGCAAACTGTGTACTCGGGCGTTCGTTTACTCGAGATTATTAAAAATTCACATGAAAAAACGTCACGGTATCGTGACAAAAAGCAAAGCTCGATCATTCTTATGCGATTTTTGTGGCGCTCGCGTCTCCTCGAAGAAAGCTATCGAGGCCCATATCAGAATCCACACCGGTGAAAAAATCGCCAACTGCGATATTTGCGGCAAAGGGTTCAGCACCCGGGAGAATCTCAAAATGCATCGTCGCGTTCATACCGGCGAAAAACCTTACAGGTGCAACCAGTGCGGCAAAGATTTCACTCAAAAAACTTCCCTCGTCGTTCATTTGCGATATCACAACGAGGAGCGACCTTATCAGTGCCTGGAGTGTGGCAAAGCCTTTGTTACTGCCAGTTTCTTGAAAAAACATCAAAAGACACACGCCAATGATAAAGCGAACGAAACTACGAGCCTCCACTTTGCTGAATAA
- Protein Sequence
- MDEPTKNSGSKAPSVSEIEITSRINGSVSDAKGLLINEHGSGKFPKRKKEVQRKADDDAQEGKSSERSRKKYCGKNNTGISEKNDCTIRDKRRDVKCDDCGRNFGKKSDLVEHLKQHRHKCENCAKSFRLLRNLNAHVDKVHRVRYHECAVCHYKSTNKGTLKNHFIRLHTSDYEFACEVCSKKFKIRKALNHHVKLYHIDSAPIVCDVCGHYSKNLHALKAHMRYRHYKPEFVCHICNRGMTTKENLEQHIDWHKTREKVSCPTCGKKFRARDLETHTRVHTGVKPFACPVCGKTFRRQTAQEQHILIHTGKKPYICDICGRAFAQKPGLMGHRKKHPGPLPPFPVVSIKNIITQSVRAGSRGGKKSRAPHKCGKCNGRFFHMTKLSEHLKNVHGIERAFHCDECGKAFRNASNIKRHKLIHTGLKKFVCDICGWACNQKSNLEFHRRRHVKDYAYNCELCRDKGFISKSEYEDHMVNVHAQKKMYNCELCSRTYGYKKNLTAHLRIHHAELGNETVPVFKYNCKLCTRAFVYSRLLKIHMKKRHGIVTKSKARSFLCDFCGARVSSKKAIEAHIRIHTGEKIANCDICGKGFSTRENLKMHRRVHTGEKPYRCNQCGKDFTQKTSLVVHLRYHNEERPYQCLECGKAFVTASFLKKHQKTHANDKANETTSLHFAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -