Hdid006332.1
Basic Information
- Insect
- Hyposoter didymator
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold128209:2820533-2821174[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.4e-17 5.1e-14 51.6 0.0 2 42 77 118 76 121 0.94 2 3 1.6 1.8e+03 -1.4 0.0 30 40 121 132 119 135 0.75 3 3 7.1 8.2e+03 -3.5 0.0 25 32 205 212 204 212 0.81
Sequence Information
- Coding Sequence
- ATGCAGCAGCAACAACAGCAACAACAACAACAACAACAACAGCATTCGTCGAATACGGGGGGAGGAGGCGGTGGAGGAGGAGGAAATGGGAACGGTAACGGAAATGGCGGGGGTGGTGGTGGTGGTGGACAGTCGCCAGGGCCAACGCAATGTCCGAGCAATTGTCAAAGTCCTTGCGCGAGTCCACAGGCTACGATAAAGAGGAAAAGATCGACGAATCCTCAAGCCGATGAAAACTTTATTCGAGCCCTCGAAGCGGTTCGTTACGGTGGTATAGGTTTTTGTAAAGCCGCCAGAATGTTTGGGGTTAACAATCGTACCTTGTGGCTCGAGTACAAAAAACGTGGATATCCGAACAATCGTCCCAGCTTAAAATCCCGCGTTAAACAAGAAACAGCCTCGTCGCCACCGCCACCACCAGCCGCTTCTTCGCAAACCGTCAATTCCCAAAGTCCAACCCCAATGGGACCACCGACGACACCTCACACGACACACAACACACATCCGACACACACGATGCTCACCGCTCATAGCCCTCACGCTATGCTCTCCGGATACATCGACAGCAGACACACCGATTATACATTACCGAGCTCCACCATGCCCATTAATTTACACGGCGTCAATTACAATTCCATGTGA
- Protein Sequence
- MQQQQQQQQQQQQQHSSNTGGGGGGGGGNGNGNGNGGGGGGGGQSPGPTQCPSNCQSPCASPQATIKRKRSTNPQADENFIRALEAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQETASSPPPPPAASSQTVNSQSPTPMGPPTTPHTTHNTHPTHTMLTAHSPHAMLSGYIDSRHTDYTLPSSTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -