Hkah002466.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:6425691-6449189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.95 42 4.4 0.3 1 21 139 160 139 161 0.92 2 13 0.0067 0.3 11.2 0.4 1 23 169 192 169 192 0.92 3 13 0.57 25 5.1 1.8 1 14 196 209 196 212 0.87 4 13 0.018 0.78 9.9 0.3 2 23 256 277 255 277 0.96 5 13 0.00021 0.0092 16.0 2.9 1 23 290 313 290 313 0.97 6 13 0.74 33 4.8 0.9 1 21 317 337 317 338 0.96 7 13 0.00037 0.017 15.2 0.5 3 23 383 404 381 404 0.92 8 13 1.1 47 4.3 2.7 1 20 419 438 419 443 0.89 9 13 1.5 65 3.9 1.0 3 21 453 471 453 472 0.94 10 13 0.54 24 5.2 1.5 3 23 522 541 521 542 0.94 11 13 0.26 12 6.2 0.9 2 23 550 572 549 572 0.96 12 13 0.043 1.9 8.7 1.9 1 23 577 600 577 600 0.94 13 13 0.00065 0.029 14.4 2.5 1 23 606 629 606 629 0.91
Sequence Information
- Coding Sequence
- ATGGAAAGAGCGGAAAGTGATAGAAAGAGTGTTAAATGTGAAGACGAGGAAGAAACAAGGGAAAGGGAAATACAGAAATGTTTAAATGAATTTCAAGACAATTGTGATGATAGAGATTTTGTGGATGAACAAGAAATTGATTTGGAGGATGTTTTCAAAGGTCTTGAAGAAAAACAAGATTCGGAAATCGAAAGTCTGCCAGATCTGCCCCCCAGGGCTCCTTCGCCGAAGAGAAAAAAACCTAATCTTAAAAAACTCCAAGTGCAGACGAGAATGAAAACTATAAACTATTCTAAACATGCTACTTTGTTATCTAAGGCTATGTGCAACAGTCGAATACGTTTACTTACTATCGAAGAACAAAAAGAGAAGTTCAACGCGAAGCTGCAAACTCCAGACTTCGTGCGAGCGCCTTTCAAGTGCGCCATTTGCCTCTGTACGTCATTTCGCTCGCTCGAGGATCTGGTTATTCATCTCGAAACTTATAAGTCCCAGAGTAAAAAACACATTTGTGCAATATGCAAGCGTCGGTATGAAACGGAGGCACAGTTGACCGCCCACTCTGCCAAGATGCATTGGTATGAATATGTATGCAACACATGCGGGAAGAAGTGCGATACCTATTACGATATAGTGTACTGCTTTGAGAGTCACCTGAAACATGGGAAAATGATACTTAATAACGCCTTTATAAGATTGCCGCTTTGCAACGAAGCTATGTATCACACTATGGACAAGTACACGGGTCTCAAGGAAACAATTGTAAAATGTACCCAATGCAACATTGGCTTTCAGAAAATCAAAGAATTAACAGCACATCTAAGTCTGCACTTATCCCCACAGAATGCAACACAGCAGAAACAAATGTTCGAATGTGACATATGTCACTTGATGTTCACCAAGCGCAACAAACTGTCCACCCATATGAAGCAATGGCACCTATATTCGTACACTTGCAACTCGTGTAGTGACAGTTTTATGAACTGGCAGCAAGTTGTCTATCATATGAAACACAACATCTGTAAAGTAGACAAGGCCAGCAAACATATGACATGCAGATTCTGCAATAAGGTGGTCAAAGTGAAAACATACGGAGGATACAAACACATGTATTTATATCACTTCACGCAACATTTCAACGTGCATTGCAACTTATGCGGCGAATCCTATGAGTCCAACTTCAACTTGTACCGACATCAGATTGCGAAGCATGGCTATGCGCGAATAAACCACCACGAGCTTGGCGATCCTCGTTACCACTGTGCCCACTGCAAATTCTTTTTCGCTGACGACAAAGCTTTTCAAGAACACGTAGTGAGGTACGGGCACGACGAGGTTAAAGACATTCCAAATGGGTGCACAATGTGCAGACAAGTATTCGAGAACGTGGAACAACAGCGTGATCACATCTGTAAACAACCCTACGGCTCTCGATATAAAGCTTTATATCCAAAAACTTGCTGCTACtGCGATGTCCAGCTCAGCTGCCATCTCGAGTACTCCACACACATGCACACGGTTCACAGAGAGCTAACATACATGCCTCTCTCTGGTTACGACTTGTGCGAGCGCTGCGGCAAAACGgtCTACAAAAGAGGTATGGAGTCGCACATAAAACTCCATCACGACACTACCGTAAAATCAGTATCATGCAGGTACTGTCCAGATATGTTCAACAACCACACGTCGGCTGTCAGTCATATGTTAACCAACCACACGCATAAGCCGTACCTCTGCGCTATTTGTCCATTGCGTTTTAAGCATCGATGCGAAGCGCGGGACCATATActcaagGTACACACACCAGTCATGCTGTACTATTGCAGTACTTGTGATCGCCGCTTTTCACATCTGGACTATCTCAACGACCATTCTGTCAAGATTCACGGCACCAACATCAAAGGGCGCTCTGTTTACCTTCCTCGCAGGAAAGCAAGGCGTATTGTGGTATACCCACACATGAAGATAGATTGTACACTAATTGATAAAGAATACTTGGAAAAGGCAGAAATTGAAATTTGTGATTATATGgatgaaaatgataaaaaactGGACAACTATTTAGAATATGTCGTGTTCAATAATGCAGGCGAAACAATTGTTAAggccaaaaaaaagaaaccatataaatataaaaagcagAAAAAGACAACAAATATAATTGATAACAGGAACATAATGTacgtaaagaatattaaaatccCCACCGGTGATAACGTACCTGTTACATCAAGAGTTAATGAGTTAACTAGTATTTGTAATGACGGGAGCTGCGATCCTCACAATACAGTGGAAGCTAGACAAGTTGAGAAGGCTCTGATTGAAGATGTTTCACAAGAGGATATTGATGCCGATGATGGAGTAAATGACGAAAGTATGGttgaatatataaatgaagATGAAAGTATGGTTGATGACGTAAATGAAGTTCTTATTGAAAACGTAAATGAAGAAACAATTGGAGGACACCAAGAAGGTGTAGGTGGTGACATCATGGAAGTGGACATGTTAGATGATCTATACGAAAATCATGACGTAATTGATGTGGCCGGTTGTGAATATGTTATGGCAGGTGGAacactttataaaattattagagAATAA
- Protein Sequence
- MERAESDRKSVKCEDEEETREREIQKCLNEFQDNCDDRDFVDEQEIDLEDVFKGLEEKQDSEIESLPDLPPRAPSPKRKKPNLKKLQVQTRMKTINYSKHATLLSKAMCNSRIRLLTIEEQKEKFNAKLQTPDFVRAPFKCAICLCTSFRSLEDLVIHLETYKSQSKKHICAICKRRYETEAQLTAHSAKMHWYEYVCNTCGKKCDTYYDIVYCFESHLKHGKMILNNAFIRLPLCNEAMYHTMDKYTGLKETIVKCTQCNIGFQKIKELTAHLSLHLSPQNATQQKQMFECDICHLMFTKRNKLSTHMKQWHLYSYTCNSCSDSFMNWQQVVYHMKHNICKVDKASKHMTCRFCNKVVKVKTYGGYKHMYLYHFTQHFNVHCNLCGESYESNFNLYRHQIAKHGYARINHHELGDPRYHCAHCKFFFADDKAFQEHVVRYGHDEVKDIPNGCTMCRQVFENVEQQRDHICKQPYGSRYKALYPKTCCYCDVQLSCHLEYSTHMHTVHRELTYMPLSGYDLCERCGKTVYKRGMESHIKLHHDTTVKSVSCRYCPDMFNNHTSAVSHMLTNHTHKPYLCAICPLRFKHRCEARDHILKVHTPVMLYYCSTCDRRFSHLDYLNDHSVKIHGTNIKGRSVYLPRRKARRIVVYPHMKIDCTLIDKEYLEKAEIEICDYMDENDKKLDNYLEYVVFNNAGETIVKAKKKKPYKYKKQKKTTNIIDNRNIMYVKNIKIPTGDNVPVTSRVNELTSICNDGSCDPHNTVEARQVEKALIEDVSQEDIDADDGVNDESMVEYINEDESMVDDVNEVLIENVNEETIGGHQEGVGGDIMEVDMLDDLYENHDVIDVAGCEYVMAGGTLYKIIRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -