Hkah006402.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyposmocoma kahamanoa
Gene Symbol
-
Assembly
GCA_003589595.1
Location
NW:751438-758135[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0035 0.16 12.1 1.9 2 23 124 145 123 145 0.95
2 16 0.0001 0.0045 17.0 0.3 1 23 151 174 151 174 0.97
3 16 0.00011 0.0047 16.9 2.1 1 23 188 210 188 210 0.99
4 16 0.0058 0.26 11.4 5.3 1 23 216 238 216 238 0.99
5 16 0.1 4.5 7.5 3.2 1 23 246 269 246 270 0.96
6 16 0.72 32 4.8 3.3 1 23 277 301 277 301 0.90
7 16 6.7 3e+02 1.8 3.8 2 23 306 327 305 327 0.94
8 16 0.15 6.6 7.0 2.9 1 23 399 422 399 422 0.97
9 16 0.43 19 5.5 3.2 1 21 430 450 430 451 0.94
10 16 5.5 2.4e+02 2.1 3.0 2 23 459 480 458 480 0.94
11 16 0.01 0.44 10.7 4.4 1 23 565 588 565 588 0.97
12 16 0.096 4.2 7.6 0.6 1 20 596 615 596 617 0.91
13 16 3.6 1.6e+02 2.6 6.1 2 23 625 646 624 646 0.96
14 16 0.033 1.5 9.1 6.4 2 23 650 672 649 672 0.94
15 16 4.9 2.2e+02 2.2 0.8 2 15 678 691 677 699 0.79
16 16 0.24 11 6.3 5.3 1 23 705 727 705 728 0.96

Sequence Information

Coding Sequence
ATGTGTTTGAGTTATTTCTACCATTCACAATTTAGTGAAGAAAAAATGCCCAAAAATCGAAACAAACTGCTCAAACCAGATCCTGAAGCAGACACTGAGTCCTCATCTCAAGAGACATTATCTAAGGATGTTGGTCAGAAGTCAGAAAAAATACATGAACAATCTCAAGACACGCTTAACCACTCCCAAGAAGACATGATGAGTATGTTCGCAAGTGTTTGGGTCAAAGTCGAAGTGGAGGAGACTAGTATGGAGGATGAGCAAGATGAGGAGACTGTGTCACCTAGAGAGTCACCTGTTCCTAGTGATgcGACCACTCCAGAAGTATTACCGGAAAAAAGAAAGCGAAATCCGCCTCCATCAACCTTATACTGTGAACTATGCAATTATTCTACAAAATACAAGAACTGTCTAAAAGCTCATATAATGGGCCATGCTATGATAAAACCTTATCCCTGCCCGTACTGTGACTACGGCACAAAATTCAGACCCTCATTACAGAGACACATTCTAATAAAACATGCGGAAAAAATGAATGAGCACAATATAAAACCAGAAACTTTCAAATGTGAATACTGTGACTACACAACAAACTTCAAATGGAATTTGAAAGGCCACGTACGAAAGCACAAACCAGAAAAGCAATACAAATGCACATACTGTGACTACGAGTCTGCATACCGGCATAACTTTTTGAAACATAGCAAAACGCACACTCGtaaacaaattgaaaagtttaagTGTGATAAATGCCCATTTGAAACTAAATTTGAAGGGCACATTCAAAGACATTTGGCTAAAATACACCACGAAGTCATGGAAGCAGCACACAATTGTGACTTATGCGATTTCTCGACGCGTTTTAAATGGAGATTGAACATCCACAGGCAGCGAAGCAAGCATGATAATGTTATCAAGTGCAGTTATTGTCCTTTTGAATCTTACTTTATGTGTCAGTTTAAAAAACACAGAGAATTACATTATTTGCAAATATATGGAGGAAGCAAAAAGAAGTATAAAGTACAGAATGTAGAGAAGTCAACAGTCGAAAATACATTGCAAAACCAAATTGAAGAGAGTATTGAACATTTTGACGCCATGCAAAGtatagttgaaaataaaaatgaggaATATCATTGCGATGATGAAAAACAAAGTGAAGAAATGGATAAGTTTGAAGAATTTActgataaatttaaatgtgataaatgcaattttgaaactaaattcGAAGGACATATCGCCCGGCATCTGTCTAGGACACACAATGTACTTTTGAACCAAGAGTTTCGATGTGATTTCTGCGATTATTCTACAAAATTGAAATGTAGACTAAATATTCATTTACAGAAAAGTTTGCAGGAGCTGACAATCAAGTGTCCGCACTGCGTATTCGAGACTTACTattcgtgtcaaataaaaaaacacgccTCTGTACATTTTAACGAAATTTTTGGCACACGACAACTCATACAATTTTCAAACAACACAGAAACATCTCCATATGAACCCCATCAAAATACAACAAATATTCATGAAATGACTTCTGGACCTCAACAAAGCGAACTTCTAACTCAAGAAAGTACAGTCCACGCCATcaatggtaaaaaaaataacaaatacaaattggATGCCAACTCCATAGACTGGCATTCTATTCAAGTTTTGGAATCGGACAATAAGGATAAACCTTTTCAGTGCCACATGTGCGATTACACATCAAAATTCAAAGCTTCCGTTCAAAGACATTTCCAACGTTTACACACGGGCTCACAGAACCGACCATACAAATGTGTAAACTGTGATTTCTCCACTAAAACAAAAGATCAAATCGCTTTACACAATAAACGCAGTCAATCGGACACAATTCTCACATGCAAAATCTGTCCGTTCACAACAACTTACAAATGCCAACACGTTACTCATCAGAGAAGTCATTATataaacaaatgtaatttatgtagtTATTCGTGTAGGCATAAGTACGAATTAATAAAGCATTTCTCATCATTTCACTTAGGTAACAGTATCAAATGCCAATATTGCGACTACAGGGCAGCCCGGAAAGAAAGTATACTATGTCATGAAACAATACACACTGGACAGAAGCCATACAAATGTGACATTTGCGAATACCAAACTGTGAGACGTTGCTTACTTGATTTACATAAGAAACGACATCACTACGTACAAACAGATGTCACCGTTGTCAGTCGAGACAAACTTAACACCCTGAAAGTTATTGAAGATTTCAAAGACGTGGAAAATATGATGAATAGTGATGATTATGCCTGTAAATAA
Protein Sequence
MCLSYFYHSQFSEEKMPKNRNKLLKPDPEADTESSSQETLSKDVGQKSEKIHEQSQDTLNHSQEDMMSMFASVWVKVEVEETSMEDEQDEETVSPRESPVPSDATTPEVLPEKRKRNPPPSTLYCELCNYSTKYKNCLKAHIMGHAMIKPYPCPYCDYGTKFRPSLQRHILIKHAEKMNEHNIKPETFKCEYCDYTTNFKWNLKGHVRKHKPEKQYKCTYCDYESAYRHNFLKHSKTHTRKQIEKFKCDKCPFETKFEGHIQRHLAKIHHEVMEAAHNCDLCDFSTRFKWRLNIHRQRSKHDNVIKCSYCPFESYFMCQFKKHRELHYLQIYGGSKKKYKVQNVEKSTVENTLQNQIEESIEHFDAMQSIVENKNEEYHCDDEKQSEEMDKFEEFTDKFKCDKCNFETKFEGHIARHLSRTHNVLLNQEFRCDFCDYSTKLKCRLNIHLQKSLQELTIKCPHCVFETYYSCQIKKHASVHFNEIFGTRQLIQFSNNTETSPYEPHQNTTNIHEMTSGPQQSELLTQESTVHAINGKKNNKYKLDANSIDWHSIQVLESDNKDKPFQCHMCDYTSKFKASVQRHFQRLHTGSQNRPYKCVNCDFSTKTKDQIALHNKRSQSDTILTCKICPFTTTYKCQHVTHQRSHYINKCNLCSYSCRHKYELIKHFSSFHLGNSIKCQYCDYRAARKESILCHETIHTGQKPYKCDICEYQTVRRCLLDLHKKRHHYVQTDVTVVSRDKLNTLKVIEDFKDVENMMNSDDYACK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-