Hkah007292.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:11195641-11222340[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.28 12 6.1 2.9 1 23 100 123 100 123 0.95 2 21 0.0029 0.13 12.4 6.7 1 23 130 152 130 152 0.98 3 21 5.9 2.6e+02 2.0 4.4 1 23 225 247 225 247 0.96 4 21 0.051 2.3 8.4 1.2 2 23 253 274 252 274 0.96 5 21 6.1 2.7e+02 1.9 3.1 1 23 280 302 280 303 0.94 6 21 0.16 7.1 6.9 3.4 2 22 549 569 548 569 0.95 7 21 3.2 1.4e+02 2.8 1.0 1 23 667 689 667 689 0.82 8 21 0.2 8.7 6.6 0.6 2 23 823 844 822 844 0.96 9 21 0.0054 0.24 11.5 2.8 2 23 916 937 915 937 0.96 10 21 0.074 3.3 7.9 0.4 1 23 945 967 945 967 0.95 11 21 0.085 3.8 7.7 3.6 1 23 1005 1027 1005 1027 0.95 12 21 0.00022 0.0098 15.9 4.0 1 23 1035 1057 1035 1057 0.99 13 21 0.035 1.5 9.0 1.8 1 23 1140 1162 1140 1162 0.99 14 21 1.2 53 4.1 4.4 1 19 1216 1234 1216 1238 0.92 15 21 1.2 54 4.1 0.1 2 23 1245 1266 1244 1266 0.96 16 21 0.0023 0.1 12.7 0.5 1 23 1332 1354 1332 1354 0.96 17 21 0.013 0.58 10.3 1.1 1 23 1360 1382 1360 1382 0.96 18 21 0.0062 0.27 11.3 2.6 1 23 1472 1494 1472 1494 0.97 19 21 0.00015 0.0068 16.4 1.4 1 23 1500 1522 1500 1522 0.99 20 21 2.7 1.2e+02 3.0 4.0 1 23 1611 1633 1611 1633 0.96 21 21 0.0029 0.13 12.3 4.6 1 23 1644 1666 1644 1666 0.98
Sequence Information
- Coding Sequence
- ATGCAGCGAGGCGCGGGGCGCGGGCGGCGGTGCTGCTGCCGCGGCGATGCTCGCTGCTGCCCGCCGCCCGCCCGCCAGTCAGCCGCGCGCCACCGACACGAGTACTGTTTTACCCGCGCGTTGCCGCTGCATCCTCTCCGCCGCGCTCAGCGGAGTATGCTACAGCAGATGTCCTCGCCGCCGAGAGCACTACCTGGCGAGGTCGTGAATCTCGTGCGCCCCATTGAAGGCCGTCTGTGCGGCGCTATTGTGGAGGACTACCAACAACTTTTGCCGCACAGCAAGACAAGAAGAAATTACAATTGTTCTAAGTGCACGTACCACACGCGGAATTCGCGCGACTATCTGTTGCATGTGCGTGACGTCCACTTTGAAAAGTTCAAAATATTCTATTGCCCGCACTGTGATTACGCTTCTAGACACCACCAAAAGTTATTGCGACATATGAAAGTTCATAACGAACTAAATATGGAATTCACTTTAAAAATGAATTCGGAAGTACATTTAATTTCGGAAAACACAGAAAGCATTGAAGACTTTCTAGAGGAAGTGGAAGAATACGAAGATGAAGAAATGTATATTGAGGAATGCACTGAGGACTTTATCGGTGACGTGGACGAGTCTAGGACTGATGAACCCACTTCAGAATCCTCTAAAGATAAGAACAAATTCTTCTCATGCAACAAATGTAATTACGTTACTCATATACGTGGAAGATATACGAAACACGTTAAATATCATTCTATGCCTATGATAAAGTGCACCATGTGTGATTTTCGTACGCCTTATAAGTGGAACCTAGATCGTCACAATAAAAACCACGGTGGCACCGGTAGCTTCCACTGCTCTATGTGCAACTTCACAGCGGACATCAAGCAAAGTCTGACGGTGCACGAAATGAATCATCACACGCCGCCTGCGGGCCAATCGGGTGCGAGTCGCCGTCGCAATCGGGTGGGCGCCAGCGACACAGCTCTCGCCTTCTCCGCAGTGAACGCGCTCGTCCCCAAGGAGGAGGAAGGGAGCGGTGATTCGCGATCCTCACACTCGGCCTCGGATATGGGTCTACAGTACGCAGAGAGAGACATGGTTAGCTGCAACAGTGATTCTAACGACGCCACTGTTCCTGACGCCGGTGCCAAGAGAGACGACTCGAATTTGGCACCAGATGCACAGAACCGGCATTCACCCGGCATCGCGATCGATGAaggaaaatttcaaaaacaaagcagGAAAATTCCTCGGCCGCCGCCCCCTCTAATACCCATTAATCCGTCGACGCCAAACCAACATAAAACATCCAACGGCGAACCACCGCAGAAGAAATTCAAAGAAGCAACCGATTGTACAGACTTAAGTGTCaataacaaatttgaaaatttacctGCCGACATTACTTTGATACCAGTAAATAATATATCCCATCCaaaagaaacaacaacaaatcgCAAGAAAAATGAGTCCTTTTTTGACAAACTGAAAGAAAGACTGCTAACAGAGACTGGAGAAGAGGGTTcattaatatgtaaaaattgCGGATTTGAAAGCAAATGTTTATCAGAACATTCTGTTCACGAGAAAAATTGCACTCCGCAATCAAATCGAATTGCGACCAACACCTCTGTCTCAAGTTTAAGCTCTACACGTTGCCAAAACTGTAGACACAGATGTAAATCTAGTGCAGATCTGTATGTTCATATGCAAACTTGTAAAAAGTATGAATCTGTGGCGAACAACTCTATGGAAGTGGGAACTCAGCAGAGCAATGAAAATCAGTCCattaacaaagaaaaagaaacagaaCCTCATCCTATGGAAAATGTAGTTTTTGTCTGGAATAACATCAGTCAGGAATCAAACAAGTATGATATGCCACTTGACATAAGTATCAATGACGATTCCACTCTTCCCGAAATTCAGTCATGCTATGATCCTGAAATCATCGAGGAAAATGAGAACATGAATCTGTCACCAAGTCAGGCTGCCGGGAAAAAAGTGTTTAAATGTCCACATTGCCCATTTTGGGCCTCAACTGCATCAAGATTCCATGTGCATATAGTaggacatttaaataaaaaaccgtTCGAATGTTCCTTATGCAAATACAAGTCAAACTGGCGCTGGGATATAACCAAACACATCAAACTAAAATCTGCTAGAGATCCAGAACATAACGAAGCTAAAGTCCTAATGACCGACGAAACTGGTAGGAGGAACTACAGCAAATACAACAAGTTTCTGGCAATGCCAGTCATGAATGAGATTGGCGAGAATGAATTTCATTATATTGACCCTAATACTGCGGCAGACTCATCCATGGAAATTGATGAAACGTATGATATTAGTGAAAGTGCAACTTCGTCATCTGAAATGCCACTCAATTTACAAACCCAACACAGCGAGTTTATATCTGAAAATTTTCACAACACACTCGAAGATTCTAAGAAGCCTAAGAAAACATTGTGGAAATGCAAGAAATGTAATTATAAGGATTCGTCAAAAGAAGCACTGTTAGAGCATGTTCGGGAGCATTCTAGAGCCGACGATGATTCTAAGCCTAAGAAGTCGGAAACTACTCCAGATCCTGCTGATTTGGCGTACCGATGCGGACATTGCAACCAACTTTCCAACTGGAAACACGTAATACAAAGACATTGTCGATTGAAGCACGACGGAGTGATAAAAGTGATAACGACAGTGAAACCAAAAGTAGACACAACAAATGTCAGTGACAACAACAGTGACTACTGTACCAAATGTCCTTTCAAGTGCAGCGACAAACGACTGCTTAGTGCGCACATGCAGCAGCATCAACCTTCGCCTAACTCTGTATTTAAATGCTATTTTTGTCCATACTTCGTCAAAGACGAAcaagaattaataaatcatCTCGTACTACATGGTGTTACTGAGCCCGAAGAATACATATCTAACGCCATGGGGAACAAATTTACCATACCTCTGTCAGAACAAACCGAGTCAACATCGACTCCCAACGCCTCAACTAAAAGGCACAAATGCACAGAATGCCCATATGAAACTAACAGCAAGTCTCAATTCATGTACCACGAACAATTTCATAGGCTTCCAGCGGACACTCCTTATAAATGTCCAGAATGTAACTACAGCGTTTCAAAAAGACATCTTCTTCATCAGCATCTGAGAGTACATGGAATATTCACTAAGAAAGGTGAATTAGAAGCTGAGCTAGAAGCAGCCGCTTCCAATTCCAAAGAAGAAATTAAAACAGAATACCCTGTACTCGATGAAATTCCATTTGTATGGGTATCAGCCAAGAatgaatttcataaaatgtacaAGTGTCGATACTGTTCATATGTTAACTCTCAAAAATGCAAAATACCTAACCACGAAAAAATTCATTGCATTGTATTTGAAAATACTGAAATAACTGTATACAAATGCTTAGAATGCAAATACACTTGTGATAATGCAGGAAGACTTGCAGAACATTCCAAAACTCACGAAGAGATCTATGGACGCATTTACTGTCCAGTTGAGGAGGATGTCCCTGATGAGGAACAGATAGCAAAATTACGAAAAGTTATTGAAACCGAAAAATTAAACGCCACCGAAGAGTTTAGAGAAGATGGATTACAGGAGACTAAAGAGTTGAAAATTATACATTTCTGTCACAAGTGCCCGGCAAGATTTTTCACGGACAGTGAATTAAAAATTCACGACAAATTCCACGACTTAACGTTTGAGAATAAATGTAAAAGATGTGAATTTTCAGTTCCCCAAGAAAGCGAATTACCCGCACACATTTTTGTTCATTCGGACGAGTataataccaaaacaaaaatgctGAAATTTATGCACGTAATTCATCCCGCTCACAAAGAACCGCTATTGGAACTAGTTCACTGTCCAACCACCTCCGAAATCACATGGGTAGTAGCAAAACCTAGCAAAAACTTCGAAGATTTTGGACATAAAAAATCAACAGACACGAAGCATGTCCCAAAACAATATAGCTGCAAGGAGTGTCCAGCCAAATTCTTTAAAAGTTCAGCGCTAAGTTACCACATGGGACTACATGGAGGCGATGGCGACCACAAATGCAAGAAATGCAGCTATGCTGTAAAGAATATAGGCAATTTGGCAAAACACGAGTTACTACACGACAACGAAGGCAAAGGTTCGAACTGCGATTATGATTCCGGAGACGACATGGATTTCAAAAATATACCGTTGTCAGGAACAGATctatttcaaagaaaaactGAAGCACAGAAACGTGTATTAACGGACAAAGATAAATTAGTAAAGCCCAATGATCATTTCCCACCAGTCCTTCAAGCCGATCCGCAGTTTGGTTATTTGATGCATGGAAACCCAGAGTTCATATACCCTACTTACCTAAAAAACGGCCGCCAGAAAGAAAAGAGATACAAATGCCACAAGTGTCCATCGGCATTTGAAAAGAGAGAACAgtacaaaattcatttatctctACATGGTTCAAAGCAAAGGTACAAATGTGAATTATGCGATTACTCAGTTAAATACTACGCTAATTATGTTCAGCATATGCGTAAACATCAAATGAACGACGAAGCTCAAGCCGAGAGGAAAAAAGGTAGCAATGATTATGGCGATAATGAAAGTCAGGACGATAAGATAGAAGATTGTACAGACAATATTAAGTTAGCCATTAAGACTATGCCAAAAGGAGCACCGCGTAGCGATTTTCAACAATTTTCAGTCAGTGATCAACAGACTCTCAGACTTCTCCAACGTCGCCGTTCAATCAATTCAGCAAAAGAAACGAGTCCATCTGAATCACCTACGAAAGATAGAAAGTTACACATGTGTTTGTTGTGCCCATACACGAATCAAAGACAAGACGCTCTTCACAACCACTACAGACGACACGATGAATCTGATGCATTGAATACGACTAATCATAAATGCACATACTGTGATCTATCAGTAGTTCAATCGCACTTCTTGCGTGATCACCTCAAAACACATTTCAGTTATCATAAGAACCAGAATCCTGAATGTTTTGTAGCGAATCAAGATGTGAGCTTCACCATTACAAAAGTAGATGAAGAAGACACAGCCACAGATCTCAAATTggatttgaaaagaaaatactTTTCATGCAATGATGAAAAATtatatgtgaaaataaaaacggGAGAACTAATGGTGGagtaa
- Protein Sequence
- MQRGAGRGRRCCCRGDARCCPPPARQSAARHRHEYCFTRALPLHPLRRAQRSMLQQMSSPPRALPGEVVNLVRPIEGRLCGAIVEDYQQLLPHSKTRRNYNCSKCTYHTRNSRDYLLHVRDVHFEKFKIFYCPHCDYASRHHQKLLRHMKVHNELNMEFTLKMNSEVHLISENTESIEDFLEEVEEYEDEEMYIEECTEDFIGDVDESRTDEPTSESSKDKNKFFSCNKCNYVTHIRGRYTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHNKNHGGTGSFHCSMCNFTADIKQSLTVHEMNHHTPPAGQSGASRRRNRVGASDTALAFSAVNALVPKEEEGSGDSRSSHSASDMGLQYAERDMVSCNSDSNDATVPDAGAKRDDSNLAPDAQNRHSPGIAIDEGKFQKQSRKIPRPPPPLIPINPSTPNQHKTSNGEPPQKKFKEATDCTDLSVNNKFENLPADITLIPVNNISHPKETTTNRKKNESFFDKLKERLLTETGEEGSLICKNCGFESKCLSEHSVHEKNCTPQSNRIATNTSVSSLSSTRCQNCRHRCKSSADLYVHMQTCKKYESVANNSMEVGTQQSNENQSINKEKETEPHPMENVVFVWNNISQESNKYDMPLDISINDDSTLPEIQSCYDPEIIEENENMNLSPSQAAGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMPVMNEIGENEFHYIDPNTAADSSMEIDETYDISESATSSSEMPLNLQTQHSEFISENFHNTLEDSKKPKKTLWKCKKCNYKDSSKEALLEHVREHSRADDDSKPKKSETTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKVDTTNVSDNNSDYCTKCPFKCSDKRLLSAHMQQHQPSPNSVFKCYFCPYFVKDEQELINHLVLHGVTEPEEYISNAMGNKFTIPLSEQTESTSTPNASTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIFTKKGELEAELEAAASNSKEEIKTEYPVLDEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENTEITVYKCLECKYTCDNAGRLAEHSKTHEEIYGRIYCPVEEDVPDEEQIAKLRKVIETEKLNATEEFREDGLQETKELKIIHFCHKCPARFFTDSELKIHDKFHDLTFENKCKRCEFSVPQESELPAHIFVHSDEYNTKTKMLKFMHVIHPAHKEPLLELVHCPTTSEITWVVAKPSKNFEDFGHKKSTDTKHVPKQYSCKECPAKFFKSSALSYHMGLHGGDGDHKCKKCSYAVKNIGNLAKHELLHDNEGKGSNCDYDSGDDMDFKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGSNDYGDNESQDDKIEDCTDNIKLAIKTMPKGAPRSDFQQFSVSDQQTLRLLQRRRSINSAKETSPSESPTKDRKLHMCLLCPYTNQRQDALHNHYRRHDESDALNTTNHKCTYCDLSVVQSHFLRDHLKTHFSYHKNQNPECFVANQDVSFTITKVDEEDTATDLKLDLKRKYFSCNDEKLYVKIKTGELMVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -