Basic Information

Insect: Hyposmocoma kahamanoa
Gene Symbol: Bcl11a
Assembly: GCA_003589595.1
Location: NW:6836974-6858101[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0013 0.055 13.5 5.1 1 23 266 288 266 288 0.98

2 10 0.014 0.63 10.2 0.9 1 20 292 311 292 313 0.95

3 10 0.0026 0.11 12.5 1.1 1 23 320 343 320 343 0.96

4 10 9.4e-05 0.0042 17.1 1.4 1 23 346 369 346 369 0.97

5 10 0.22 9.7 6.5 3.5 2 23 373 395 373 395 0.92

6 10 0.42 19 5.6 0.1 5 22 407 424 404 428 0.87

7 10 9.6 4.3e+02 1.3 6.0 2 23 443 465 442 465 0.95

8 10 0.14 6.4 7.0 1.5 1 23 471 494 471 494 0.95

9 10 2.4e-05 0.0011 18.9 0.6 3 23 505 525 504 525 0.99

10 10 0.00017 0.0075 16.2 0.9 1 23 531 554 531 554 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0013	0.055	13.5	5.1	1	23	266	288	266	288	0.98
2	10	0.014	0.63	10.2	0.9	1	20	292	311	292	313	0.95
3	10	0.0026	0.11	12.5	1.1	1	23	320	343	320	343	0.96
4	10	9.4e-05	0.0042	17.1	1.4	1	23	346	369	346	369	0.97
5	10	0.22	9.7	6.5	3.5	2	23	373	395	373	395	0.92
6	10	0.42	19	5.6	0.1	5	22	407	424	404	428	0.87
7	10	9.6	4.3e+02	1.3	6.0	2	23	443	465	442	465	0.95
8	10	0.14	6.4	7.0	1.5	1	23	471	494	471	494	0.95
9	10	2.4e-05	0.0011	18.9	0.6	3	23	505	525	504	525	0.99
10	10	0.00017	0.0075	16.2	0.9	1	23	531	554	531	554	0.95

Sequence Information

Coding Sequence: atgtttCAACAAGGAGATGTAAAGTTAGAGACTAATATAATACGAAATAAGTCCATTTGTTGTGGCTGTTTGAGCTCAGATAGAAATCTGCGGGAATTAGGCGAATTTTTAGAATTGTTTACCAAAATTAACGAAAATGTGGTTTatgtaaacGAACACATAATGTTATGTTGGGAATGTATGGCATTGTTACggaaagtaaatatatttaggCATAATGTTGCTGCGGCTCAGATGGTACTCAGCTATTATTATGACGTAGAGAATCCACCCCAAACATTATCAAAACtatcaattttaaaactacACGATGAAGAAGATAAACTACAATTAGAAATAAAACCACAAATTGAAGAACAATTCCCAAATGTCAAGGAGTCAAATGGAGAACATATTAACCTGTCAATAGAAGTCCAAGTGAAGCAAGAAAATGAGGATAACTGTGTGGATGATATTTTCAACGATGGATGCTCTATTGACTATGGCATAGAGCTGAATAATATTCAAGATATTAAACAAGAGcTGCAACACATTGTCAAACCAAGAAAGAGAAAACCGAAAAATATAGgtcaagaaaataaatacaaagaaatatttatacctGATCATAAATGTGAAGTAGTAAGACAGGAGATAAGccaaaatgaaattaatgatTGGTTAGAGAAGGAGAGAAACAGTCCTTATTACGAAGCAGCAAAGTTTAAATGCGACAGTTGTGCTATTATTTTGAAGTCACGAAATCGAAATACGCATTTTGACACTTTTCATAATCCGAGTAAGTACAGCAACCCGTACAAATGCGATATATGCCAGTGCATTTTCTCTAAAAAGTCAACCGTATCTCATCACATTAAAGAACATCGCTACATATACACTTGTACAACTTGCGATGTCACTTGTGTATATAAACAGAGTATGAGAAACCATTTGCTGGCACAGTCAAGAAAGATGGTTTACCAGTGTTTGCTGTGTCCCGGGAGATACAGtAGTAGAAGTCTTTTCTTCAGACATTACAAAGAAGCCCATCGCCATTTTGTTTGCGATTATTgcaattctaaatataaatcgAAACGGATGTTGATTAAACACATTATaacAAACCATTACACGCCTAAATGTCACATCTGCAacataacgtttaaaaaatatcgaATCCAGCAAGAGCACATGAATAGGCAACATGTCTACGCGCCTACAGAAGCAAATTACTGCGCGCCGTGTGACAAGCAGTTCGCCAACGACGCTCAGTACCGGTATCATATTTCCACAAGTGTTGCTCATTCTCGAGAAAGGCGAACAAAcatGAAGAAGAAGGAGAAGGTAAAGTGTCCGCAATGTCCAAACTTGTACCACAGGAGGAGCTGTATGATGAATCATTTCCGGCACGTGCACTTGAAGCAGACCAAGTACTTCTGCAGTATCTGTGAAAGGTACTTCTTGAACAGCACGCGGTTGATTGACCACCGACGCGAGAAACACGAAGGATATGTGCCCGTGAAGGACAAACTATGCAACATCTGTGGCAGAGGATTTTCTACCAATCGCATTCTGACAAATCACATACGAACTCACACCGGGGAGCGTCCTTTCCAGTGTAACCTATGCGATTCAAAATTCACGCAAAAAGTAGCACTCAATTCTCATGTTAAGTTTATACATAAGAAGTTTCGCAGGAACACTCGGCACGTCGACGgcaatcaatgtaaataa
Protein Sequence: MFQQGDVKLETNIIRNKSICCGCLSSDRNLRELGEFLELFTKINENVVYVNEHIMLCWECMALLRKVNIFRHNVAAAQMVLSYYYDVENPPQTLSKLSILKLHDEEDKLQLEIKPQIEEQFPNVKESNGEHINLSIEVQVKQENEDNCVDDIFNDGCSIDYGIELNNIQDIKQELQHIVKPRKRKPKNIGQENKYKEIFIPDHKCEVVRQEISQNEINDWLEKERNSPYYEAAKFKCDSCAIILKSRNRNTHFDTFHNPSKYSNPYKCDICQCIFSKKSTVSHHIKEHRYIYTCTTCDVTCVYKQSMRNHLLAQSRKMVYQCLLCPGRYSSRSLFFRHYKEAHRHFVCDYCNSKYKSKRMLIKHIITNHYTPKCHICNITFKKYRIQQEHMNRQHVYAPTEANYCAPCDKQFANDAQYRYHISTSVAHSRERRTNMKKKEKVKCPQCPNLYHRRSCMMNHFRHVHLKQTKYFCSICERYFLNSTRLIDHRREKHEGYVPVKDKLCNICGRGFSTNRILTNHIRTHTGERPFQCNLCDSKFTQKVALNSHVKFIHKKFRRNTRHVDGNQCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -