Hkah006270.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:1032115-1057925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.6 27 5.1 1.5 1 23 74 97 74 97 0.94 2 22 0.63 28 5.0 0.7 2 23 126 148 125 149 0.94 3 22 0.058 2.6 8.3 1.1 2 23 171 192 170 192 0.97 4 22 0.042 1.8 8.7 0.0 1 23 196 218 196 218 0.97 5 22 0.13 5.6 7.2 1.9 1 21 223 243 223 246 0.90 6 22 0.5 22 5.3 3.3 2 23 254 276 253 276 0.97 7 22 0.00012 0.0055 16.7 2.0 2 23 283 304 282 305 0.95 8 22 0.0019 0.086 12.9 2.5 1 23 311 333 311 333 0.96 9 22 1.1 50 4.2 1.2 1 10 339 348 339 349 0.94 10 22 1.2 54 4.1 0.2 2 23 539 561 538 561 0.90 11 22 0.32 14 5.9 3.6 2 23 584 605 583 605 0.97 12 22 0.0061 0.27 11.3 1.2 1 23 609 634 609 634 0.96 13 22 0.25 11 6.3 0.8 2 23 640 662 639 662 0.92 14 22 0.098 4.4 7.6 1.3 2 20 670 688 669 692 0.79 15 22 0.063 2.8 8.2 0.4 1 23 698 721 698 721 0.97 16 22 0.015 0.67 10.1 0.7 1 20 727 746 727 749 0.94 17 22 1.2e-06 5.4e-05 23.0 3.9 1 23 755 777 755 777 0.99 18 22 2.3 1e+02 3.2 0.4 1 23 838 861 838 861 0.91 19 22 0.15 6.9 6.9 2.9 1 23 967 990 967 990 0.93 20 22 0.0055 0.24 11.5 0.3 2 23 1018 1040 1017 1040 0.95 21 22 0.0072 0.32 11.1 0.9 1 23 1063 1085 1063 1085 0.99 22 22 0.14 6.2 7.1 0.1 1 23 1089 1112 1089 1112 0.91
Sequence Information
- Coding Sequence
- ATGGGTTCGCAACAACGAGACAAACTCATGAAAATTAAGACCTTGAAGGTAATGCCTGGTGCTATCGTAAAAGCAAGAAAAGACCGAAAAAGAGATGACGATGGAACATTGTTGGATCGAGAAAAGTCGAAATTAGAAAGAGAGAAGCATTATCACAATACCAAACAGATACTTGTCTGGTCAAACGCGACGCCAATAAGAAAGCATAACGATGACGGTTACGTGTGTTGTTTCTGTCCAGAAAACTGCGCTGAGCCAGCTGTATTAAAACGGCATACATTAGAGAAACACGCCGATTACAACATGAAATCCGCCAGTTTTATGACAAAAACTAACATCAACTCTTACTACGTTAAAATGGACATAACTGGTCTTAGTTGCAAGATTTGTTACTCCAGTATGGACAATCTTGAATCTCTGATTGAACACCTGAGAAAAGTGCACCACAAGAAAATATATACGGATATCAACAACAGAATcttgccatttaaatttaacactTCAACGCTTACCTGTTTTCAGTGCTCAAGCACATTTGGTAAATTCAAAGCGTTGTTGGAACACATGAACACTCACTACAAGAATTTCGTCTGTGAAATTTGTGAAGCTGGCTTTGTAACACGAACCATGGCCGTAGCGCATACCAATATACATAAAATTGGTACTTTCAAATGTGGGTATTGTCCCAAAGTATATGACACTGCAGTCAAGAAAATCAACCACGAACGATGTAATCATACAAGAGTCGAGAAACAGAACAAATGCGGTTTATGTACCAGTACCTTTAAATATTATcatcaaaaacaaaatcacTTGTTAACTGTTCATGGCGTTAGTTCAAACGTGAAATGCCAGGCTTGTGATAGAAGCTTTGCGGATCAGAGAAAACTTCGTGTACATGTTAGGAAGCATCATTTAATGGAACGCCAGTACAATTGTGACTTCTGTGAAAGAAAGTTTTTCTCCAAAAGTGAACTGAATGATCACAAAGTAAAGCATACCGGGTCTAAAGAGTTTCAATGTGATAAATGTAATAAGTCTTATGGTGCAGCGACAGTTGAAGAGCTGTTGAATAGAATGAATCCAGACGTTCACGTACAAAAAGTCATCAAAATCGAAAAGGTTGAAACTGTGAAAGAAGAATCGCAAATTCAGCACACCGTAATCGTACCTAAAGCTATTAAGGTACAGAAAGCATCAATGCAGAGACCGATTAAGATTAAAAACTTTGGGCTGATCAAACAAGAACCGTCATCACCCAAAAAGAAAGACTCgtcaaagaaattaaagataCTCCTGATAAAACCGCAAcctgaaagaaaaattaaactaGTCGCTAAAAAAATAACGTCCGGAAATAGTAATGCGAATGATAAATCGTTATTACAAGAGCACAAAAATTTGATTCAAGAATTGACCAAATATTCCAACGCTACTCTGATAAAGAACGTATTTGACAATGGATACCATTGTTTCTACTGTGACAGTTGCAAGTTGACACCGGCTGAGCTTAAGCGTCATACAATTGAAGAACACGGCGATGCAACATTGACTTGTTTTACCAAACGCGATAGTGTCGCAAAATTAAGAGTGAAACTTGACATAACAGACTTAAAATGCAAGATGTGTTTCCAAGACATTGAAACATTGGAAGAATTAAAAGAACATCTCGTTAATGTCCATAAACGACCAGTAAATTTggaattaaaaaatcaaattgtacCAATGAAATTTGACGATGGAGATTTGAAATGCTGCATATGTggaaatttcgtttattttatgaGTGGATTATTGAAACATATGCACACGCACTATCCTCACTATGAATGCACAGCACCAGGTTGCAACTCAGCGTTTATGAATCAAGGCTGTCTTAATAACCACATAAGACATTTGCACACGGCGTCCAATCTAAAATGCAACTTCTGCCCGGAAATATTTGACAGAGAAGTGTTGAGAAAAACGCACGAAAAATACAAGCACGGAGCTAAAGTTATGATGAGCAAGTGCCACATTTGTGGGATGAAATTCAGCGATTTCTCGATTAAGCAGAAACACGTGTCTGATGTTCATGACGGGCGAAGAGAATACAAGTGTAATGCTTGCGATAGTGTCTTGTGCTCGGTGGCTGGTCTCAGGAGACATGTAAATCGAGTACACTTGATGGAACGTCGCTTCCCTTGTGATCTTTGCGACAAAGCGTTCTTTGCTAAAGCTCAGTTGGACAACCACATAATTTGTCACACGGGCGAAAGGAACTTCAAATGCGACTTCTGCAACAAGAAATTTAGTCGAAAAAAGACTCTTAAAGAACATATTAGGATACATTTAAACGATCGCAGATTCAAGTGTCTTCAGCGCATATTCTTCAAAACTGAGGACGAGCTTGAATATGAAAAGCCTAAAGTTCAGGCAAAAGGAGAGGTCCTTGAGCGGCACCGAGTTACTGTGAGAGAAATCCTTCTTTGTACTAATGCAACCCCTATCAGAAGCCGCGGCGGAATTGGTTATAGCTGTTGCTTTTGTGCCGACCAATACCCTGATGCCGCTGACTTAAAAAAGCACACAATCGAAGGCCATGACGAGACTGTCAAAGCCAGCTTTATGAAAGGACTAGATCTGTCTAAATTCTATGTCAAAATGGATATAACAGAGCTGCAATGCAATTTATGCGGAAGTTTAATCGAAAGGGCCAATGGCGAAGTCGAAGTTAAACTCAAGAAAGACTTAAACTTCTCAACATTCATAGCTATAAAACCTACGGCAGTCAAAAGAAAACGGAAACACGCTTTTGAGAGGGAAAGAATATCCGAACTGGACTTACAGATGGACAATTTAAAGACCATATTGCGTTGTTCCAACGCTACACCAATAAGGTCTTTTAAGTCGTCGAAATTTGTTTGCTGCTACTGCCACGACGAGTTCCCCGACCCTATATACCTGAAACGTCACAACATTAAATCGCACGTTTTCGACCAAGAGCGACCTGATGTATTGAATATACGTTCGCTATCTCGGTATATTGTTTATCTCGATATCACAGACTTGAAATGCAAAATTTGCGATGAGgaaattgacaatttaaaaCTTCTTACTAAACATATAACAAAAGAGCATAACGAATTCATAAATCAAGGTTTGAATAATCACATTTTGTGCTTTAAATTCGATATCGCCGATGTGTACAAGTGTGTTGAAtgtaattacattattaacGATTTCACAAAGCTGCAATTACATATGAATAAGCATTATAAGAATTATTTGTGCGAGTTTTGCGATGAAGGTTTTATAAACAGGAACATGATGGTGGACCATAAGCAGGAGGTTCATAACATGCAGCAAAAAGTCAAGTATCGTGTTAAATTCGTTGCTAAGAAACAGAAGAAAATTCATTAA
- Protein Sequence
- MGSQQRDKLMKIKTLKVMPGAIVKARKDRKRDDDGTLLDREKSKLEREKHYHNTKQILVWSNATPIRKHNDDGYVCCFCPENCAEPAVLKRHTLEKHADYNMKSASFMTKTNINSYYVKMDITGLSCKICYSSMDNLESLIEHLRKVHHKKIYTDINNRILPFKFNTSTLTCFQCSSTFGKFKALLEHMNTHYKNFVCEICEAGFVTRTMAVAHTNIHKIGTFKCGYCPKVYDTAVKKINHERCNHTRVEKQNKCGLCTSTFKYYHQKQNHLLTVHGVSSNVKCQACDRSFADQRKLRVHVRKHHLMERQYNCDFCERKFFSKSELNDHKVKHTGSKEFQCDKCNKSYGAATVEELLNRMNPDVHVQKVIKIEKVETVKEESQIQHTVIVPKAIKVQKASMQRPIKIKNFGLIKQEPSSPKKKDSSKKLKILLIKPQPERKIKLVAKKITSGNSNANDKSLLQEHKNLIQELTKYSNATLIKNVFDNGYHCFYCDSCKLTPAELKRHTIEEHGDATLTCFTKRDSVAKLRVKLDITDLKCKMCFQDIETLEELKEHLVNVHKRPVNLELKNQIVPMKFDDGDLKCCICGNFVYFMSGLLKHMHTHYPHYECTAPGCNSAFMNQGCLNNHIRHLHTASNLKCNFCPEIFDREVLRKTHEKYKHGAKVMMSKCHICGMKFSDFSIKQKHVSDVHDGRREYKCNACDSVLCSVAGLRRHVNRVHLMERRFPCDLCDKAFFAKAQLDNHIICHTGERNFKCDFCNKKFSRKKTLKEHIRIHLNDRRFKCLQRIFFKTEDELEYEKPKVQAKGEVLERHRVTVREILLCTNATPIRSRGGIGYSCCFCADQYPDAADLKKHTIEGHDETVKASFMKGLDLSKFYVKMDITELQCNLCGSLIERANGEVEVKLKKDLNFSTFIAIKPTAVKRKRKHAFERERISELDLQMDNLKTILRCSNATPIRSFKSSKFVCCYCHDEFPDPIYLKRHNIKSHVFDQERPDVLNIRSLSRYIVYLDITDLKCKICDEEIDNLKLLTKHITKEHNEFINQGLNNHILCFKFDIADVYKCVECNYIINDFTKLQLHMNKHYKNYLCEFCDEGFINRNMMVDHKQEVHNMQQKVKYRVKFVAKKQKKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -