Basic Information

Insect: Hyposmocoma kahamanoa
Gene Symbol: -
Assembly: GCA_003589595.1
Location: NW:3902110-3943598[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.014 0.61 10.2 0.6 1 23 320 342 320 342 0.98

2 11 0.00046 0.02 14.9 8.7 1 23 349 371 349 372 0.95

3 11 0.056 2.5 8.3 1.8 1 23 376 398 376 398 0.97

4 11 0.05 2.2 8.5 1.8 1 23 403 426 403 426 0.97

5 11 0.0068 0.3 11.2 0.4 1 23 430 453 430 453 0.94

6 11 2 90 3.4 0.8 3 22 467 486 466 490 0.90

7 11 1.2 52 4.2 0.4 2 23 548 570 547 570 0.94

8 11 0.0074 0.33 11.1 1.1 2 20 586 604 585 607 0.89

9 11 6.8e-06 0.0003 20.6 1.5 1 23 613 635 613 635 0.99

10 11 1.6e-05 0.00072 19.5 5.6 1 23 642 664 642 664 0.98

11 11 4.2e-05 0.0019 18.2 4.1 1 23 670 693 670 693 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.014	0.61	10.2	0.6	1	23	320	342	320	342	0.98
2	11	0.00046	0.02	14.9	8.7	1	23	349	371	349	372	0.95
3	11	0.056	2.5	8.3	1.8	1	23	376	398	376	398	0.97
4	11	0.05	2.2	8.5	1.8	1	23	403	426	403	426	0.97
5	11	0.0068	0.3	11.2	0.4	1	23	430	453	430	453	0.94
6	11	2	90	3.4	0.8	3	22	467	486	466	490	0.90
7	11	1.2	52	4.2	0.4	2	23	548	570	547	570	0.94
8	11	0.0074	0.33	11.1	1.1	2	20	586	604	585	607	0.89
9	11	6.8e-06	0.0003	20.6	1.5	1	23	613	635	613	635	0.99
10	11	1.6e-05	0.00072	19.5	5.6	1	23	642	664	642	664	0.98
11	11	4.2e-05	0.0019	18.2	4.1	1	23	670	693	670	693	0.95

Sequence Information

Coding Sequence: ATGCGATGCTGTGCGCCTGGTTGCAAGAATGACTCCAGACATGTCTCAAAATCACAAGGAATTACGTTTCATATCTTTCCAACTGAGTCCTCGCTCCGGTCCGCATGGCTTCGTGCTATTGGGAAACATTCCTGGGAGCCAAAAGACCGAAGTGCTATATGCTCTGTACACTTTTTAGCTGATGACTTCTATGAGACGAAGAGTGGTCTTAGGAAAGTTAGGGCTGGCGCTGTTCCTATTGTATTGcagTTTAGCGAAGAAGACAAACTACCCCAACGGCTATGTGTAGAATGCGCCTACAGACTATTCAACTGCAGCAAGTTCAGATGCAAGTCTCTTCGAGCTCACTCTTTGATGATGGAATTAGTGAACAGACACGACATTTTAACAATACCAGTTATTAACACAATAGACAGAGAATCGAACCAGTTAACATCACAATTACAACTAAAAAACTTCGAAATTGATCACTGCGATTTATACATAGAATTTAACGAAACTAAAGCAGAACATTTGGAGCGACACCCTGATTTTGATGCCATAAATGTAGATGTTCGGGTTAAAAATGAAGAcagtgacatttttattaatgaaactgATTTTCAACAAGATATCGTACAACCCGAAAGCGTTCCTGAAAGCGTTAAAGACGAATCCAATCTAAATGAGCCTAACACGATGTCAGATGTCGGCTTCACATCCGACGATAGCTTACCTCTAGAGGTATCGAGGAAGAAACCCAAAAACCGGAAAATAGAAAAGAAGGAAACCGTAAAAAAAGTTAGAAAGAGATCGGTAAAAAAAGATTGCAATGAACCTAAAATCGACAGGAGACGCAAACCTTTTTTGAATGAAGATTTAAACGAAACTTTGTTTACTATAACCGATTTAACGTTTGAAGAGCAAGTGGCCGAGATTGAAAAGAGACAGGAAAGtgcaaattacaaaaattcagTTTTCAAATGCACAGAGTGTTTTAAAGGATTTCTCGATGAGGATGCCTATAATGGACATATGAGTCGGCATACAGATcaaTGCGGcgaatatcaatgtgacatctGCAAAACTCACTTCAAGCACCAGCACGCTCTACGTAAACATATAACAGCTCACCACACGCAGAGGTTTAGTTGCAACCAGTGCCCTTATGTCACTACACATAGACAAACAGCGAGATTGCACGAAAGATGGCACAAAGGCACCAAATACCAATGTCCTCACTGTCAAGATGAATTTGTCAAATTTACAACCTACATGGGTCACATTCGCATAAAACATCCTTCGGACTTTGTTTGTCAGCTGTGCGGATATTCCTTTGTAAGCGAGAAAGGCATCGAGCTGCATAAGAAGTTGAAACATAGACTGGATACCGACGAGatacCTGAAGATGGGCCGTTTTGTGAAATGTGCAATGTTAGATTCGTTTCAACGGAAGCTCATAAACAACATCTGAGGGTATCGGCTAGACATAATACATCGGACAAggAATCACGCGAACCAAATAAACCTAAAAAGGGTAGAAAATCAAAAGAGGCTAAAGAGAGGGAAAAGAAAGTTCGAGAAAAGAACAGCAAAGAAGATTTGGATGATGAAAAGAGACGGATATATCCTAGTCAGATGCGGAAGGCAGAGGGACCTATACCCTGTGAACAGTGTGGACTCCAACTGGAAGATTCTCGAGCATACCACGGCCACTTCAGACGAATGCACCCAGACAAGAATCGAACCAACTACCCTTCGATGAAGTCGCCTTGCATGTGCGAAGTTTGCGGAAGAATGTTCCAGAGTTACGCGCTACTTAAAGATCACCGTTGGACCCACACAGGAGAGCGTCCGTTTAAGTGCGACACGTGTGGGAAAAGTTTCCGCATGAAACAACGACTTGTCGCGCATCGGCGAGTGCACAGTGCCATGAAAGCAAGTTACGTGTGTAACTTGTGTGGAAAACACTTCTCGACTCATAGCAACAGACAGCGGCATATGTTTATCCACACAGGGCTGAAGCCGTTCAAATGCGAGATGTGTGGCAAGTGTTTTAAACACGCAAGCGAGAAACGGGCCCACATCACTTACGTGCATCTCAAAAAGCCCTGGCCGAAACGGACACGAGCTAAACGACGATCGGAAAACAGACAGGGTTCTTTACCTCCCCAATCTCAATTGCCATCGAGTACAACCGACTTGGATATCGTGCAACCAATCTGGCCCACCTGCGACCCTAAACTGGACCACATTAATACCATGATGGACGACAAGCCaatgtattataatttgaaaatataa
Protein Sequence: MRCCAPGCKNDSRHVSKSQGITFHIFPTESSLRSAWLRAIGKHSWEPKDRSAICSVHFLADDFYETKSGLRKVRAGAVPIVLQFSEEDKLPQRLCVECAYRLFNCSKFRCKSLRAHSLMMELVNRHDILTIPVINTIDRESNQLTSQLQLKNFEIDHCDLYIEFNETKAEHLERHPDFDAINVDVRVKNEDSDIFINETDFQQDIVQPESVPESVKDESNLNEPNTMSDVGFTSDDSLPLEVSRKKPKNRKIEKKETVKKVRKRSVKKDCNEPKIDRRRKPFLNEDLNETLFTITDLTFEEQVAEIEKRQESANYKNSVFKCTECFKGFLDEDAYNGHMSRHTDQCGEYQCDICKTHFKHQHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIELHKKLKHRLDTDEIPEDGPFCEMCNVRFVSTEAHKQHLRVSARHNTSDKESREPNKPKKGRKSKEAKEREKKVREKNSKEDLDDEKRRIYPSQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWTHTGERPFKCDTCGKSFRMKQRLVAHRRVHSAMKASYVCNLCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRTRAKRRSENRQGSLPPQSQLPSSTTDLDIVQPIWPTCDPKLDHINTMMDDKPMYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00828008;
90% Identity: iTF_00828008;
80% Identity: iTF_00828008;