Basic Information

Insect: Hyposmocoma kahamanoa
Gene Symbol: -
Assembly: GCA_003589595.1
Location: NW:624465-631731[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0068 0.3 11.2 2.1 2 23 243 265 242 265 0.95

2 12 0.27 12 6.2 5.0 2 23 301 322 300 322 0.87

3 12 0.11 5 7.4 0.0 3 21 329 347 328 348 0.94

4 12 0.85 38 4.6 0.5 2 23 380 402 379 402 0.95

5 12 0.075 3.3 7.9 1.0 2 23 437 458 436 458 0.95

6 12 0.00011 0.0049 16.8 0.2 3 21 466 484 465 485 0.95

7 12 1.5e-05 0.00067 19.5 4.5 2 23 501 522 500 522 0.97

8 12 1.1 48 4.3 7.7 1 20 530 549 530 552 0.78

9 12 3e-05 0.0013 18.6 2.2 1 23 557 579 557 579 0.98

10 12 1.3e-06 5.6e-05 22.9 2.2 1 23 585 607 585 607 0.98

11 12 0.00014 0.0061 16.5 3.9 1 23 613 635 613 635 0.98

12 12 0.00011 0.005 16.8 5.4 1 23 641 664 641 664 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0068	0.3	11.2	2.1	2	23	243	265	242	265	0.95
2	12	0.27	12	6.2	5.0	2	23	301	322	300	322	0.87
3	12	0.11	5	7.4	0.0	3	21	329	347	328	348	0.94
4	12	0.85	38	4.6	0.5	2	23	380	402	379	402	0.95
5	12	0.075	3.3	7.9	1.0	2	23	437	458	436	458	0.95
6	12	0.00011	0.0049	16.8	0.2	3	21	466	484	465	485	0.95
7	12	1.5e-05	0.00067	19.5	4.5	2	23	501	522	500	522	0.97
8	12	1.1	48	4.3	7.7	1	20	530	549	530	552	0.78
9	12	3e-05	0.0013	18.6	2.2	1	23	557	579	557	579	0.98
10	12	1.3e-06	5.6e-05	22.9	2.2	1	23	585	607	585	607	0.98
11	12	0.00014	0.0061	16.5	3.9	1	23	613	635	613	635	0.98
12	12	0.00011	0.005	16.8	5.4	1	23	641	664	641	664	0.98

Sequence Information

Coding Sequence: ATGGAAGAAATGATAAATGCAACTGTTGATTTAAAAATCGattatttaaatctaaaagaTAGATTTCTACCTAAAACTGTGTGCGAAAAATGTTATTCAAGTTTTATAAAGGCGCACAAGTTCTTCAACAAGGTAAAATGTAGCCAGGATGTACTGaaatctaaatataatttgaattatgtTGATATTAAAGAAGAAAATGAAGTGATTGATGACCATAGTCCTGTAGTACCACTAAGTCCAAAATGCGAAGGTCCACAACCTCTAAAAATGGACATAGGCGCTCAGAGGCCAATAGAGATCCTAATCTGTAATAAACAAGAAATTGATATTGAATCCAATAAAGAAACAGTTCAAAGTTTTGATGCTACTTGTGAAAGTCCAAATAATGAAAGTCCGATTCTTGAAAATCCACATAAATCTCAAGACTTTGTAGATGATGATGTTATTCATTCTTAtgatgacaatgacaatgaatCATCGTTGGATTCTGTCAACCCAGATGATAAActagtaaaaattaacaaaaagacATCAACATGGAAGCACAAGAAATGTCACATGAAGTATGACATGTTAGAATTCTTTTCTTATGCTGGTGTACCAATATTCAATGAAGAGGAAATTAAAAGTAGTAACTCGGAATCATCTGATATGGACACCGGTCATTCAAACCCCAAAACGGTAGTAAAACAGATGGATAAGTCCTGGACAAGTTACAAATGGTATTGCTTCCATTGTACTGAGAAATTTAAATCTATTGAAGAGTTACGTAGTCATAGTAAAATGGTGCATGACGTTTGTTTTGGATACAGTTGTGCCGATTGCAATTATGTTTTGATGAATACTTATAATTCctttattgaacatgtcagacAACATAGAAGCGTGTTGAGATTATATTGCCAATATTGCAACCGCAAATTCAAGAGTAAAACAGAGTGTGAAAAACATTCGTATGAGCATTGGCAAGCTGATAAGATTTGCGATTTATGTGGAGAGCTTCTACCTGATCAAGATTCGCTTTTGCGTCACACCAAGCTGTACAAGCGCATACGTTTACCGAGAAGCGCGGTCAGAGTGCGCCCTGAACTAGTACGTGGGGAAGAAGACAAGACATGGAAGGACTATCATTGGACTTGTCAGGACTGCTACATGCGTCACCCGGACGTGGATTCTCTCCGCTCGCACGTGCAAACAGTCCACAATAAATGCTATGCAATTAAATGCATGGATTGCCTTCGTGCGATCGACAACTTTAGACGGTTTGTCAGCCACGTCCACATTCACAGACCGCATCTCAAAGACTATTGCCACTATTGTGACGTCCATATCACAGACGAAGCCGCTATGAAACAGCATCTCAACGACCACGAAACTGGAGACCGAAGACCCTGCCACGGTTGTGGGCAAATATTCAAGGACAACGCAGAAATGTCACGTCACATGAAAGAATACAATGCTCAACGCTGTGTACGAATCTTGACAACAGAAGACTTGACTTGTCATCAGTGTCACAAGTATTTCAAGAGCATCGGAAATCTGAAAATACATATGAGAGTTCACAGTAATATTTCTGCTCCGGTCCATATGTGCCATTTATGTGGAAAGCATTTCCAAGCACCGAGTATACTTAAACATCATATGGAGTGCCACAATAATAAGATCCACGTGTGCCATATCTGTGATAAGGGTTTCAGTACTGTCCTCGGTTTAAAAAAGCATGTTAACACTCATTCAACTGACCGTCCATTCTCATGTAACGAATGTGGGAAATGTTACCGGTTGAAAGAGCAATTGAAGAGACACATTATAGTGCATAGTGAAGTGAATCCGTACAAGTGTTCATTTTGTGAGAAACAGTTTAAGTTCTCCAGTAATTGGAAGAATCATGAACGTCAGCATACAGGTGCTAGGCCATACGAGTGCAAGGTTTGTGATAAGACGTTTTCTAACTACTCAAACTGCGATAAACATATGAAACGGAAACATGGTATGACTATATGCAAGCATAAGAACACTGATCATGGTAAGATGGAAATAAATCAACAGACAGGGGAAATAAAAAGCCTGGTTACAAATAAGGAGACACAGCAGTGGCTCGATGATTTGATGAAATCGAACAAAAGGTCAGGAGGACGAAAAAAGAAAGTAGACAAAAGTCAGTAA
Protein Sequence: MEEMINATVDLKIDYLNLKDRFLPKTVCEKCYSSFIKAHKFFNKVKCSQDVLKSKYNLNYVDIKEENEVIDDHSPVVPLSPKCEGPQPLKMDIGAQRPIEILICNKQEIDIESNKETVQSFDATCESPNNESPILENPHKSQDFVDDDVIHSYDDNDNESSLDSVNPDDKLVKINKKTSTWKHKKCHMKYDMLEFFSYAGVPIFNEEEIKSSNSESSDMDTGHSNPKTVVKQMDKSWTSYKWYCFHCTEKFKSIEELRSHSKMVHDVCFGYSCADCNYVLMNTYNSFIEHVRQHRSVLRLYCQYCNRKFKSKTECEKHSYEHWQADKICDLCGELLPDQDSLLRHTKLYKRIRLPRSAVRVRPELVRGEEDKTWKDYHWTCQDCYMRHPDVDSLRSHVQTVHNKCYAIKCMDCLRAIDNFRRFVSHVHIHRPHLKDYCHYCDVHITDEAAMKQHLNDHETGDRRPCHGCGQIFKDNAEMSRHMKEYNAQRCVRILTTEDLTCHQCHKYFKSIGNLKIHMRVHSNISAPVHMCHLCGKHFQAPSILKHHMECHNNKIHVCHICDKGFSTVLGLKKHVNTHSTDRPFSCNECGKCYRLKEQLKRHIIVHSEVNPYKCSFCEKQFKFSSNWKNHERQHTGARPYECKVCDKTFSNYSNCDKHMKRKHGMTICKHKNTDHGKMEINQQTGEIKSLVTNKETQQWLDDLMKSNKRSGGRKKKVDKSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -