Hkah002609.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:1658507-1661898[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00016 0.0073 16.3 0.3 1 23 182 204 182 204 0.97 2 17 0.00016 0.0069 16.4 1.8 1 23 209 232 209 232 0.96 3 17 6.2e-06 0.00027 20.8 0.4 1 23 263 286 263 286 0.97 4 17 0.064 2.8 8.1 3.5 2 21 290 309 289 310 0.94 5 17 0.0021 0.095 12.8 1.0 1 23 369 392 369 392 0.94 6 17 0.0058 0.26 11.4 1.3 2 23 411 432 410 432 0.97 7 17 0.55 24 5.2 0.5 2 23 438 460 438 460 0.96 8 17 0.00029 0.013 15.5 0.1 1 23 471 493 471 493 0.98 9 17 0.1 4.4 7.5 3.4 1 23 499 521 499 521 0.98 10 17 0.034 1.5 9.0 2.4 2 23 528 548 528 548 0.97 11 17 0.042 1.9 8.7 0.2 2 23 568 589 567 589 0.94 12 17 0.2 8.8 6.6 2.7 2 23 594 614 593 614 0.97 13 17 0.28 12 6.1 2.3 2 23 624 646 623 646 0.96 14 17 0.00041 0.018 15.0 1.5 1 23 652 674 652 674 0.98 15 17 1.3e-05 0.00059 19.7 1.6 2 23 682 703 681 703 0.96 16 17 0.25 11 6.3 0.7 1 23 709 732 709 732 0.96 17 17 7.1e-05 0.0031 17.4 4.0 2 20 738 756 737 760 0.90
Sequence Information
- Coding Sequence
- ATGACTTCCAatcaaaataattcaaaaacgCAATTATGGAAAAAGAAGATAGAGCAATTGCTGTTTTTGAATAAAGTATGTGGCGTGTGCTTAACGAATAAACAGGAGATGATGCACTGTAATGATATTTATCGCATAGAAACTGAAAATTCCGCTAAGGAATATTTGTTGAAGGATATAATTGATGATACATTTGGACACCagGTCTCAAACCTCCTGGCAGCATCATATCTCTGCAGCACATGTGTCACAAATATACTGAAAGCTCATCGTATGATAAGTGACATTCGTTACAACTACAAAGTTCTTCACAAATATTTCACTATCATATCAGGACATGCAGAACACAGTATTTCAATGAAAAATGAGCAGAAACAATTGATGTTAACGATAGACAACGTTACGAGTCTCAATGTGCCATCTACGGTCACTGTAGCCGACCAGTATAACGAGAATGGAAAtgtaacacaaatatttttatgtgaagtAGATGATTTAGACTTGTCCAATAATCTAGAAGAgcaagtaaataattatttgaaatatgaatGCCCATATTGTGGTAAACAGATCAATGATTATCAATCTCTTAAAACACATTTAGTTAGCCATTCTGAAACAGCATTTAAGTGTCCAAAATGTGGGAAGAAGTTCagtgtttttgaaaaatatattaatcacAGAGACAAAGATCATTCAGAATCTGTTTCATTTTGTAACACATGTCAAATTATTGTTCACGGGGAAGGTATAGAAGAACATGAAAATGTTCATAACGATCAAACATTTATTTGTGACACCTGTAAAGAAACTTTTATGACTAAATCTGCTTTAGAACGGCACATTTCAACAATTCATGCACACGTCCAATGCCAATATTGCTTTAAAGACTTCATCAATGAATTCAAGCTAAACCATCATAGATGTCTTTTTAAATGCTTAGAATGTGTGGACAATTGTTTTCATGAAGAATATTTGGCATCCTACAGAGAGCAGTACTTGGCAATGGAGAAGAAATTCAAATGTATCAAATGTGATTTCATGTATTTGACAAGGAGTCAACTAATCTGTCACGCCAATGAGGaacatttgttacattttccatTTTTATGTGACTTGTGTGGAGATAATTTTCCTTCCAAACCGCATCTTACAGCGCATATGTATAAGAAACATGTTGATATAGACATTCTTAACCCAACAAAAAATGGCTTTGATGAATGTACTACAGAATGTGATCAATGTGGAGATCAATTTGATTCTGAAGTAGCTTATTGCAAGCATATGAGAAAACATTTAAGTGAACAAGCTCAATGCTTGTATTGTTTAAACACTTACAGCAACATAGCACGCTTAAATTTGCATTTAAAGATTAAACACCCCGAAGAATTAAACAACAAAAGTTTCATTTATCAATGCACTATGTGCCCAGAAGATTTTAATTCACGACCAGAATTCCTGAATCATATTGCTTCTCATCCGGAAGGTACTGAACACAAGTGCCGTACTTGTGGGGATACATTTCCTTCAAAGAATGTATATTTCTCTCATGTTCGAAAGCATACAATTAACTATGATAGAGAATGTCCtatatgttttaaaaagtaTACTAAACATACTATTGCTAGACATTTAAAATCACACATGAGAGAAAGCAAGACAGAAAAATCATCAGACTcgtataaaaaaggaaaacaaatctCATGTGACGTATGTGGTATTTCTTTGCACAATGAAAAAGCATTAATAAAACACAGTCAAGAACATAGTGAGTGTCAACAATGTGTACATTGCAACAAAATTGTGAGCTTTGTATTGTACAAGAAACATTTACGAacacacaatttgattgatGGGAAAAGATGGAAAGTTTGTAAATCATGtccttacaaaacaaaattctctGTATGTTTAGAAGCTCATGTTAACAGATTCCATTTACAAGTACGTCCTTACGAGTGCACGATTTGCAGAAAGAATTTTTATTCAGATTATACATTGAGAGGTCATTTATCAACTCATAATTCAGAACGACCAGAGTTATACTGCCACATATGTGGTAAGAAGTTCATAAGTAAAAAAGCTCTGGTATTGCATACAAGGTTACATACGGGCGAAAAGCCTTACCCGTGTGAATTATGTGAACAAAGGTTTTTGTCTGCTAGTAGGAGACGACAACATATGATTCGGAAGCATTTTGAACCGAGCGTAAAAtgcgaactctgtcacaagacATTTTATACTAAAAGTGATTTGAGGAGGCATGTAGGAGACTGCCATGGCGGGGGAGAAGTGAAACGGAAGAGAGGGAGAAAATCGGAGAATGTTCAAACTTCTAATGCtgactaa
- Protein Sequence
- MTSNQNNSKTQLWKKKIEQLLFLNKVCGVCLTNKQEMMHCNDIYRIETENSAKEYLLKDIIDDTFGHQVSNLLAASYLCSTCVTNILKAHRMISDIRYNYKVLHKYFTIISGHAEHSISMKNEQKQLMLTIDNVTSLNVPSTVTVADQYNENGNVTQIFLCEVDDLDLSNNLEEQVNNYLKYECPYCGKQINDYQSLKTHLVSHSETAFKCPKCGKKFSVFEKYINHRDKDHSESVSFCNTCQIIVHGEGIEEHENVHNDQTFICDTCKETFMTKSALERHISTIHAHVQCQYCFKDFINEFKLNHHRCLFKCLECVDNCFHEEYLASYREQYLAMEKKFKCIKCDFMYLTRSQLICHANEEHLLHFPFLCDLCGDNFPSKPHLTAHMYKKHVDIDILNPTKNGFDECTTECDQCGDQFDSEVAYCKHMRKHLSEQAQCLYCLNTYSNIARLNLHLKIKHPEELNNKSFIYQCTMCPEDFNSRPEFLNHIASHPEGTEHKCRTCGDTFPSKNVYFSHVRKHTINYDRECPICFKKYTKHTIARHLKSHMRESKTEKSSDSYKKGKQISCDVCGISLHNEKALIKHSQEHSECQQCVHCNKIVSFVLYKKHLRTHNLIDGKRWKVCKSCPYKTKFSVCLEAHVNRFHLQVRPYECTICRKNFYSDYTLRGHLSTHNSERPELYCHICGKKFISKKALVLHTRLHTGEKPYPCELCEQRFLSASRRRQHMIRKHFEPSVKCELCHKTFYTKSDLRRHVGDCHGGGEVKRKRGRKSENVQTSNAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -