Hkah009520.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:1850-13760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0049 0.22 11.6 0.4 1 23 290 312 290 312 0.97 2 11 0.034 1.5 9.0 2.3 1 19 331 349 331 353 0.91 3 11 2e-05 0.0009 19.1 3.0 2 23 359 380 358 380 0.97 4 11 0.00025 0.011 15.7 4.1 1 23 384 407 384 407 0.97 5 11 0.0012 0.054 13.6 1.2 1 23 410 432 410 432 0.98 6 11 1.9e-06 8.5e-05 22.4 0.3 2 23 559 580 558 580 0.95 7 11 0.0061 0.27 11.3 0.3 2 23 600 621 599 621 0.97 8 11 1.9e-06 8.4e-05 22.4 4.7 1 23 627 649 627 649 0.98 9 11 9e-06 0.0004 20.3 1.6 1 23 654 676 654 676 0.97 10 11 0.0012 0.055 13.5 0.9 2 23 683 705 682 705 0.95 11 11 0.18 8 6.7 1.7 3 19 745 761 744 766 0.94
Sequence Information
- Coding Sequence
- ATGGAGACAGAACTGGTACATCCCCTTCTATGTATTCCTAAGAAGTTCACGAACCTTGAAACCAACTGTGAGATATCCGATAATGTTTTCATTGAGGTGAACATCACGTCTCCTGACACTGAAGGTAATGAAACTTGCATTTACAATGGCTTCTGTAATATCAAACTGGTAGGAGACTATGATGTGCAATATAAACCTCAGGAAGTGACCCTTGAAGACCAAGACAATCAAAATATATCCATAATCATAACGGAAAAGCCAACTACTCCATATGACTCTCAAGTGTGGATAGATCCAGCTACAAGTCCATATGTTTATAATCGGTATGATGGAACCGGAACACAGGAATACTCAGTGTGTACTCAAACAAGGACTAGCCATATTATGTTTGAACAACATAAcacatacataacaaaaaatgtatataattacaAGGAAGCAGTCCGTTACAGTTCTTACGATGAAGTTGAGGATGTAAAGTTGAAAAGGCAGGAGAGCTGTCAGCCGGTGAGATCTTCGgacttaaatatatataaggaAGATGAATTTGAATGCGGAGTCTTTTTGTCACATTTACCTGAGGAGATAATGAATGAGAAGCAAAACCGTGATATGAAGGAACGGAAATATGTCAATGTTCAAAGTGATAATGGGGCATTGAATCAGTTGATGTCATCAGATATCCAGTCAATGTCAAAGCAAAGGAAGACAATACTGTATTTGGGTCCAGAGCCACGTAACGGACAGACTATCCAACAAATTGCATATCACGATCCGGCTGTGGGGTGCCCAGGCCTTGCTAGTGAAGTGGACAATGAAGTTAGTGTTTaTGACAACGAAGACAATGTTATTCCCCGCCAAAAGAAATACCAATGCGCGaactgttttcaaatatttgacCAAATATCTGAGTTTCGCGAACACATGGGCAACCACACTGGGGTCAAGTACAATCGCCATCAGAAGTCGGATGCTGACGAGGCTGTTAAGTACATTTGCACCGAATGTGGCAAAACCTTAAAGAATCGTGAGAAGTTCGACACTCATTGCCTTGgTCACGGCGATCCGGAACTAGAATGCAATAAATGTCACAAAGTATTCGCATCAAAATTCACTCTCCGTGTTCACCGTAAGATCCACAATCGCAAATTCCCTTGCAAACATTGCACAAGATCTTATTCCCACCTCGAAGATATGCGGGCACACATGATCAAGAAACACTTTATGTTTATTTGCGACCACTGCGAATATATGACCGAGGATTACGCGGATCTAAAAACCCATCAGCAGTCACACGAAAGTGTTTATATGGCTTCCAGCGAAACAGAACTAGATCACTCGTTATTCGATGACGTTACGAACGACAGCGATATTATACATCCGTCTGACCGCGATTGGAAGTTCGAACGTATTGAAAATTTCACCCCGAACGATATGGACCAGGAGCACCAAGACAGTGTAGATGATTTTAGGGATGATGAGACAGATATCATAATACGGGATCCTAGAGATATTCATGATTCTGAAGACATCCAAGGTGAAAAACAGGATGAAACTGATGAAGCCCACGAGGCATGCTATGACAATCGGAGTGGCGATTCGGTGATAGCTAAAGTGATGTCCAATAAAGCTTTTCTGGGTAAGAAGACTGCGAAAAACAGGAGGTATAGCAAGGTGTGCAACGTCTGCGGCAAAAGCTTCGACAGGATAAGCGACCTTAAGCGTCACCTAATAGAGCACGTGGTCCGGGTCACTTTGGCCAAGAGTCCAGTCAACAAATCCGGCATACTCAACCTACAGTGCGAAGTCTGCAACGCGTCCTTCAACTTCGTAGACAGGTACAAAGCTCACTTACGAGAACACGCGAAACTAACTATATACAAATGTACGTTCTGCAACAAATCCTTTAGCGACTCGTCAAACTTTTCTAAGCACAAAAAAATTCACGGCGCGATCTACTTCCAATGCGATATATGCCAACGTAAATTCAACTCTAAAAAAATGCTCATAAGGCACATCGATTACCATAACACAAATAACCCTATTCCTTGCATGTATTGCGACAGGGAGTTTCATTTTGAATCTATGTTAAATAAACACGTAAAGAGTGCGCACACAAAAGAGATCTGCAGTAAATTTAGGTGtcggttttgttttaattattataagacTTTGAAGGAGAAGTGGGACCACGAATGGTTAGTTCACAATGTAAGAAAGATGGTTGTAGATTGTTTGATTTGTGACAGTAAGTTTAGGAAGTATGCGGAATTGAAAAGACACTGTTCCGATATACATAGAATTGAAATTCCGCCGGCAAAGCGATTGTTGAAAACGAAAAAGAagaagtaa
- Protein Sequence
- METELVHPLLCIPKKFTNLETNCEISDNVFIEVNITSPDTEGNETCIYNGFCNIKLVGDYDVQYKPQEVTLEDQDNQNISIIITEKPTTPYDSQVWIDPATSPYVYNRYDGTGTQEYSVCTQTRTSHIMFEQHNTYITKNVYNYKEAVRYSSYDEVEDVKLKRQESCQPVRSSDLNIYKEDEFECGVFLSHLPEEIMNEKQNRDMKERKYVNVQSDNGALNQLMSSDIQSMSKQRKTILYLGPEPRNGQTIQQIAYHDPAVGCPGLASEVDNEVSVYDNEDNVIPRQKKYQCANCFQIFDQISEFREHMGNHTGVKYNRHQKSDADEAVKYICTECGKTLKNREKFDTHCLGHGDPELECNKCHKVFASKFTLRVHRKIHNRKFPCKHCTRSYSHLEDMRAHMIKKHFMFICDHCEYMTEDYADLKTHQQSHESVYMASSETELDHSLFDDVTNDSDIIHPSDRDWKFERIENFTPNDMDQEHQDSVDDFRDDETDIIIRDPRDIHDSEDIQGEKQDETDEAHEACYDNRSGDSVIAKVMSNKAFLGKKTAKNRRYSKVCNVCGKSFDRISDLKRHLIEHVVRVTLAKSPVNKSGILNLQCEVCNASFNFVDRYKAHLREHAKLTIYKCTFCNKSFSDSSNFSKHKKIHGAIYFQCDICQRKFNSKKMLIRHIDYHNTNNPIPCMYCDREFHFESMLNKHVKSAHTKEICSKFRCRFCFNYYKTLKEKWDHEWLVHNVRKMVVDCLICDSKFRKYAELKRHCSDIHRIEIPPAKRLLKTKKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -