Hkah011096.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:12078-14078[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2e-06 5.3e-05 23.0 2.0 1 23 93 115 93 115 0.99 2 11 2.1e-06 9.2e-05 22.3 4.0 1 23 121 143 121 143 0.99 3 11 5.4e-05 0.0024 17.8 3.4 1 23 149 171 149 171 0.98 4 11 6.9e-07 3.1e-05 23.8 3.5 1 23 181 203 181 203 0.98 5 11 1.5e-05 0.00065 19.6 6.5 1 23 209 231 209 231 0.99 6 11 2.2e-05 0.00095 19.1 3.1 1 23 237 259 237 259 0.99 7 11 0.00081 0.036 14.1 6.0 1 23 265 287 265 287 0.99 8 11 0.00027 0.012 15.6 9.4 1 23 293 315 293 315 0.99 9 11 0.19 8.5 6.6 1.3 8 23 323 338 322 338 0.94 10 11 0.002 0.087 12.9 2.5 1 21 441 461 441 462 0.94 11 11 0.12 5.2 7.3 3.3 1 11 469 479 469 481 0.92
Sequence Information
- Coding Sequence
- ATGTCATACACAGACCTACAAGATGTTATGAATGTTAAGGAGGAGACAACCAAATTAGAAAACAGCCCAATGGATTTACATAGGAATTTTTACATCAAACAAGAGTCCGATGGTGTTGTGGAagacaaacaaaagaagaaagtAGAGTTGGATCTGTATGCAGATCATGAAATCAAGGACGAGTTGGTCATAGGACCAGTAGTGCAGCCTGTTGATTTAGCTCAAGAAAAATTTGTGCAGAAAACATCtgatggcttgaatgttgataCTCACTCATATAAGTGTGATATATGCAATAAAAGTTTTACAAGAGAACAGAAACTTGAAAGTCATAAATTGACCCATTCTGCTGAaaagccatacaaatgtggCGGCTGTAACAAATTTTTTGTCCATAAATCAAATTTTGTTTCACATTTAAAGACTCACACTGGAGAAAGATCATACAGGTGTGACatatgcaataaatgttttacagCAAATCGGACACTTAAAATTCATAAAGTGACCCATTTGAAGACTCATATTGGGGAAAAACCATATAAGTGTGATATATGCAATAAAAGTTTTGCAAGAAACAGGCATTTCCAGCGTCATGTAATGCTCCATACTGAGGAAAAATCATACAAATGTGATCACTGTAACAAACTTTTTGCCTACAAATCACACATTAATAGACATTTAAGGACTCATACTGGggaaaaacagtacaaatgtgattactgtaacaaatattttgccTATAAATCAAGCTTTGCTATACATTTTCGATCTCATACTGGAGAAAAACCGTACAAGTGTGATTCATGCAGTAAATGTTTTACAACAAATCGGACgcttaaatttcatattatgacCCACACTGGCGaaaaaccatacaaatgtgaccACTGTAACAAATGTTTTGCCTATAAATCATGTATTGTTAAACATTTAAAGACTCATACTGGAGAAAGACCTTACAATACatgttttacaagaaaactgacTCTTAAAACTCATAAAATGACTCATTCTGGTGAAGAGATGAGAGAGATGGTTGTAGGCCCAATGGTATTGCAGCCTCCTGCTGTTGCTCAAGCAAAATCTATGCAAGTTGGTGATGGGCAAGAACACATTAAGAAGGAGCTGGATCTGTATGCTGGTCATGAAATCAAAGATGAGTTGGTCATAGGACCTGTAGTGTTGCAGCCTACTGGTATAGGTCAAGCAAGATGTGTGCAGAATACACCTAATGGGGTGAATGTAGATACTTGTCCATCCAAGTGTGATATTTGCAGTTTTACGTTTCATAAAATAACTCATACTAAAGAGAAGCCATTCAAATGTGAACAATGTAATGAATCTTTTAAGTCTAAAGCAAgttgtaataaacatttaattactaataCTGGAGAGagaccatacaaatgtgatcaCTGTAACAAATTTTTTACTTATGAATGA
- Protein Sequence
- MSYTDLQDVMNVKEETTKLENSPMDLHRNFYIKQESDGVVEDKQKKKVELDLYADHEIKDELVIGPVVQPVDLAQEKFVQKTSDGLNVDTHSYKCDICNKSFTREQKLESHKLTHSAEKPYKCGGCNKFFVHKSNFVSHLKTHTGERSYRCDICNKCFTANRTLKIHKVTHLKTHIGEKPYKCDICNKSFARNRHFQRHVMLHTEEKSYKCDHCNKLFAYKSHINRHLRTHTGEKQYKCDYCNKYFAYKSSFAIHFRSHTGEKPYKCDSCSKCFTTNRTLKFHIMTHTGEKPYKCDHCNKCFAYKSCIVKHLKTHTGERPYNTCFTRKLTLKTHKMTHSGEEMREMVVGPMVLQPPAVAQAKSMQVGDGQEHIKKELDLYAGHEIKDELVIGPVVLQPTGIGQARCVQNTPNGVNVDTCPSKCDICSFTFHKITHTKEKPFKCEQCNESFKSKASCNKHLITNTGERPYKCDHCNKFFTYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -