Basic Information

Insect: Hyposmocoma kahamanoa
Gene Symbol: -
Assembly: GCA_003589595.1
Location: NW:919555-939877[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.5e-05 0.00065 19.6 0.9 1 23 12 34 12 34 0.98

2 15 0.0071 0.32 11.1 0.8 1 23 39 62 39 62 0.95

3 15 0.039 1.7 8.8 4.5 2 23 70 91 69 91 0.96

4 15 3.6e-05 0.0016 18.4 4.3 1 23 97 119 97 119 0.98

5 15 0.00052 0.023 14.7 6.9 1 23 125 147 125 147 0.98

6 15 4.6e-05 0.0021 18.0 1.9 1 23 154 177 154 177 0.91

7 15 0.0003 0.013 15.5 1.3 1 23 185 208 185 208 0.95

8 15 2e-05 0.00089 19.2 0.1 2 23 215 236 215 236 0.98

9 15 0.045 2 8.6 0.1 1 23 242 267 242 267 0.90

10 15 5.8e-06 0.00026 20.9 7.1 1 23 273 295 273 295 0.98

11 15 0.00072 0.032 14.3 0.6 2 23 303 325 302 325 0.94

12 15 0.16 7.2 6.9 0.1 2 23 333 355 332 355 0.93

13 15 0.0076 0.34 11.1 1.6 2 23 361 383 360 383 0.95

14 15 1 46 4.3 5.5 1 23 960 982 960 982 0.90

15 15 0.0026 0.11 12.5 1.9 1 23 1144 1166 1144 1166 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.5e-05	0.00065	19.6	0.9	1	23	12	34	12	34	0.98
2	15	0.0071	0.32	11.1	0.8	1	23	39	62	39	62	0.95
3	15	0.039	1.7	8.8	4.5	2	23	70	91	69	91	0.96
4	15	3.6e-05	0.0016	18.4	4.3	1	23	97	119	97	119	0.98
5	15	0.00052	0.023	14.7	6.9	1	23	125	147	125	147	0.98
6	15	4.6e-05	0.0021	18.0	1.9	1	23	154	177	154	177	0.91
7	15	0.0003	0.013	15.5	1.3	1	23	185	208	185	208	0.95
8	15	2e-05	0.00089	19.2	0.1	2	23	215	236	215	236	0.98
9	15	0.045	2	8.6	0.1	1	23	242	267	242	267	0.90
10	15	5.8e-06	0.00026	20.9	7.1	1	23	273	295	273	295	0.98
11	15	0.00072	0.032	14.3	0.6	2	23	303	325	302	325	0.94
12	15	0.16	7.2	6.9	0.1	2	23	333	355	332	355	0.93
13	15	0.0076	0.34	11.1	1.6	2	23	361	383	360	383	0.95
14	15	1	46	4.3	5.5	1	23	960	982	960	982	0.90
15	15	0.0026	0.11	12.5	1.9	1	23	1144	1166	1144	1166	0.98

Sequence Information

Coding Sequence: ATgtctaaaaagaaaataaaattaggccCCACTTACAATTGCACACAGTGTGGCAAGCAATTCAGCAAATTGGGCCTGTTACAAGCTCACAGGAGTACTCACAGCGCAGCCATGTTCGCCTGTAAAGAATGCAAGTACATCGGCACCACAAAGAAATACCTCGCTCGTCACGTCGAACGGACACACCGGAAGAGCAAACTCGTGATAAAGTGCGAATTTTGTAAAAGACGGTTTCAATTTAAGAGCCAGATGGAGCATCACAAGCTTGTTCACACAGGTGAAAAACCCTACAAATGCAAGACATGCGGCAAGGGCTTTAATTCGCATTATTCTTTGAATACGCATCAGTTTATTCACACGGGCCAAAAGCCATTCCAGTGTTCGTTCTGCGACTACGCGTGCCGAGACAGTTCCACGCTGAGAAGGCACCAACATCGCCACATGGGCATCGAGACAGTGTTCAACTGTACTCAATGCGACAAGCAATTTAAGAAAAAGTCGCAACTCAAAGTGCATGTAGCCGAGAAGCATCTGAACATATGTGTGCGGAACCACGAATGTAAACAGTGCGGAAAGATGTTCAGGACACAGAAAGATGTCGGACTACATGTCAGGAACGTGCACGAGCGCGCTTTCGTGGCCCGCTGCGAGCTGTGCGGGCGCGTGAGCAGCTCGCCGCAGAACCTGGCGGCGCACCTGCGCACGCACGCGCCGCTGCGCCCCTTCGCCTGCCCCACGCCGGGCTGCCCCGTGGCCTGCCGCGACCGGGGCGGCCTCCGGCGCCACGTGGCGGAGAAGCATTCGGGCGTGCGGCCGCACCGCTGCGACCACTGCGGCAAAGGATTCTACCGGAAAGCTCACTTGAGAAGACACGTGAACACCCACGCGCCGCGGCGTCGCGCCGTCCAGTGCGACTACTGCAAAGTGTTTTTCTActcaaaaaattacttaataaagCACATAAACGACATGCACAACCCGAAAGCACCTCAATTGGAATGTGACGAGTGCGGCTTTATCACGAGGAACAAAATTGGCATGATCCTGCACTTGAAGGGCAGCCATGCACCACCGGAAGTGGAATGCAAGATCTGCCATTCGATATACAAACGACCGACCTACTTGAAGCTTCATTATTTACGAACTCACGGCATCAGATACAAGATGAAACAacGCAAACCGCCCGTGGTGGTGAAAGAAGAACCAGCAGGATCTGATGATGACGACACGTCTTTAGATCTCTTCGAGGTTGACAAACACGAATTGGACGACGTTTCAGACACCGAAGCCCAAAAGACATTAAGCGAGCTTCTGGAAGTAATTTCCTCAAACCAAACAACTATACAAGAGCTAGATGATCCAGTAAGTTTGAGAGAAATACAACCCATGAGGGAAATTATTGAAGCAGCGCAAGAAATTCAAGAAGTTTTAAATGATGACTCGAACAACCACAAAGCTGTCGACGATGTTGACAAATCTGTTAATGACAATGTGAAAAAGTGTACAAGACAACACAAAGGTCAATCAAAACGTGGAATTACTGTGCAATATATTGACACTTCTACAAAAGACAATGCGAAAAAGTTTAAACGTAAAAAAAGGGCAACCACAGATCaagataaagaaataaaatatgataaatcaTCGGAAGACGCTAACACTTCCATTAAAGACAGTACAAAAATGTCTATGCAAGACAAAGGACTGAATCAAAACTTGGCATTATACAATGAACTTCAGGAATTAGTGCATGAACAGAAAACTGCACAAGACGTCAAAGacttacaaattgaaaatttacaagaaaatcaaTATGATAATCATATTGAAATTGAAGTACCATTTGAAATTCCACAAACAAAAAGATCAATGGATAAATGTCAACAGTTGACTATCACTCGAACGCCTGGTCTAGAAATAGGACTCCGAGAAGTAGAAATAGTCAAAGAAATAGAACAACCAATTGAGAAAAAGGAAATTCCTATTGAAGAAGATAAACAAGCAATAAAGTTAGTACAAGATATACAAACAATGGAAGAAACATTAATTCCATTTGAAgataaacaaaaagaagaatTTGAAACATGTATAGAAGAAACTAAAGAGACTATTCAAGAAACAACTCAGTCATTTGACGAAATCACTCACCCAATTGAAGTAACCACTCAGCCAATTGAAGAAACCACACATCCAACTGAAGAAACCACACAGCCAATTGAAGAAACCACACAATCAAGTAATGAAACCAGTCAGTCAATTGAAGACGAAGTTAAGAATTTTGAATACTCAAAAGTTACGACCATGAACGACATACCAAGAAGTGTCTTTGAGAAATTTTATACCTCACACATTTCTTACATTGGCAATAAAGAAAAAGATCCTCATCCAAACGTGGAAGAAAATCTGCAAAAGGAAGTTACAAAACTAATTCAACAGAAGTTAACTGAAGTGAGACAGAAGAAGCAGGTCAAAGCGTTGGAGCGAGCGAGACGGCAATATAACCAGCGGATGAAGAGGTTTTTGAATAATGCTGATAAGAAAAAAGAAACAGTCAACAGAGAATTCGTCACCAggatatcaaaacaaaataataaaatcaacgaTAATGATACAAACGACGGTAATGATTCTAATGATGAATCATTGAAAGATTTTGAAGCAACTAATGAAGACCTAAATGACTCGGAAGCAATTAATGAGGATATCGATAGTAAAAATAATGAGACATATTCACTGAGAAAGAGAGAGAAAcgcaaagtaaataataatgaatcaaTAAATGATGTTACTGATGAATTAGATAACGACAATGATTCTGATTATGAAAATGATTTTAAAGATAAGAAACGAACAATTAACAAGTTGAAATTTAATACCCACCAGTGTTATGTATGTTTCAAGCTCTACAAAACGAAATCACTACTCATAGATCACTGCAAAGAACATTTTGATGTGTGTTCAGAAGAATTGTTGAAAAAATGTCCACTATGTCCGTTTGTTGGCcgcaaatatttttcaaaacatttgaaAGCCAAACacgatattactttaaatattaattacggAACAGTTGGCGACAGGAACGACAATTCCAACGGATCtaggtattattataatataaagaataaaaatatagataaaattgaaataataccTAGTGTTCAAAATCTGAACAGGATAGCTTATactaaaattgataaaaaacgTCGCGAAGATAAAGAAAAGGCAGTGGCTAAAactaaattagtaaaaaaaggTAAAGAATGGGTGGTTGAGGATGAAAAAATTAACATCAAAGGCAAAGATTTTATATTGCCCAAATTCGATAAAGAGTTGCTGAAAAATATCACCGGTGGTGACAATAATGAAtatctagataatttaaagaaacTATACCAAATAGCCAAAAAGGAGGGTAAAAAGATGCTGTTTCCTTGTCAAAACTGTGACAAAATTTGCCAAAATTTATCAGCGTTGACGTTGCACAGTCGAAAACATGATCCAAACGCTAAACCTTTTAAGAAAAAGGTTTGGAAGCATAAACTTAAGAATGCTAATGCTAAATCGATGGATAAGTCGACAAAAACGAATGAAGTATCGAATAATCGACTAGAGAAGCCGaaaccaattaaaaataaacataaatgtgATCCAGAACTAAAGGAattctatgaaaaaaatattcgaggTGGTGATATCGAGTTTTGgcagtttttaaaaatttttaataagatgGGGCGTGAAaatattaaagattttaaaGACCTTAGAGGGAGATTGGAATATGGTATAGAGCCTATTACTGCTCAATGTTCCGTATCTGAAAATACTGGAAATGATGAAGCTAGCACTAATCCTGGTGCAGCTCCGCCTAAAAATGATATATCtaccattaataataatttaactactactactaaagcTAAAAATAGAGTTAGAGAAGCGAGCAAAGTAGTTAAAGGTGGTGTTTATAAAAGAGTTGTTAGGTTAAGTAGAAAAGAATTTCACCGAAGAAACTTGTTAAAACGTCAACTAAGGGAAAGCATTGCTAAGAATTTTAAAAACGTTACAGCATGTCCTAAGTGA
Protein Sequence: MSKKKIKLGPTYNCTQCGKQFSKLGLLQAHRSTHSAAMFACKECKYIGTTKKYLARHVERTHRKSKLVIKCEFCKRRFQFKSQMEHHKLVHTGEKPYKCKTCGKGFNSHYSLNTHQFIHTGQKPFQCSFCDYACRDSSTLRRHQHRHMGIETVFNCTQCDKQFKKKSQLKVHVAEKHLNICVRNHECKQCGKMFRTQKDVGLHVRNVHERAFVARCELCGRVSSSPQNLAAHLRTHAPLRPFACPTPGCPVACRDRGGLRRHVAEKHSGVRPHRCDHCGKGFYRKAHLRRHVNTHAPRRRAVQCDYCKVFFYSKNYLIKHINDMHNPKAPQLECDECGFITRNKIGMILHLKGSHAPPEVECKICHSIYKRPTYLKLHYLRTHGIRYKMKQRKPPVVVKEEPAGSDDDDTSLDLFEVDKHELDDVSDTEAQKTLSELLEVISSNQTTIQELDDPVSLREIQPMREIIEAAQEIQEVLNDDSNNHKAVDDVDKSVNDNVKKCTRQHKGQSKRGITVQYIDTSTKDNAKKFKRKKRATTDQDKEIKYDKSSEDANTSIKDSTKMSMQDKGLNQNLALYNELQELVHEQKTAQDVKDLQIENLQENQYDNHIEIEVPFEIPQTKRSMDKCQQLTITRTPGLEIGLREVEIVKEIEQPIEKKEIPIEEDKQAIKLVQDIQTMEETLIPFEDKQKEEFETCIEETKETIQETTQSFDEITHPIEVTTQPIEETTHPTEETTQPIEETTQSSNETSQSIEDEVKNFEYSKVTTMNDIPRSVFEKFYTSHISYIGNKEKDPHPNVEENLQKEVTKLIQQKLTEVRQKKQVKALERARRQYNQRMKRFLNNADKKKETVNREFVTRISKQNNKINDNDTNDGNDSNDESLKDFEATNEDLNDSEAINEDIDSKNNETYSLRKREKRKVNNNESINDVTDELDNDNDSDYENDFKDKKRTINKLKFNTHQCYVCFKLYKTKSLLIDHCKEHFDVCSEELLKKCPLCPFVGRKYFSKHLKAKHDITLNINYGTVGDRNDNSNGSRYYYNIKNKNIDKIEIIPSVQNLNRIAYTKIDKKRREDKEKAVAKTKLVKKGKEWVVEDEKINIKGKDFILPKFDKELLKNITGGDNNEYLDNLKKLYQIAKKEGKKMLFPCQNCDKICQNLSALTLHSRKHDPNAKPFKKKVWKHKLKNANAKSMDKSTKTNEVSNNRLEKPKPIKNKHKCDPELKEFYEKNIRGGDIEFWQFLKIFNKMGRENIKDFKDLRGRLEYGIEPITAQCSVSENTGNDEASTNPGAAPPKNDISTINNNLTTTTKAKNRVREASKVVKGGVYKRVVRLSRKEFHRRNLLKRQLRESIAKNFKNVTACPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -