Hkah004171.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyposmocoma kahamanoa
Gene Symbol
-
Assembly
GCA_003589595.1
Location
NW:18767849-18779649[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 6.4e-05 0.0028 17.6 2.0 1 23 200 222 200 222 0.99
2 26 0.0014 0.064 13.3 0.8 2 21 252 271 251 272 0.93
3 26 1.2e-05 0.00053 19.9 0.4 2 23 308 330 307 330 0.96
4 26 0.00035 0.016 15.2 0.4 2 23 383 405 382 405 0.97
5 26 0.033 1.5 9.0 0.1 1 23 421 443 421 443 0.94
6 26 0.00015 0.0068 16.4 6.0 1 23 481 504 481 504 0.97
7 26 0.00049 0.022 14.8 3.8 2 23 544 566 543 566 0.97
8 26 0.00045 0.02 14.9 0.8 1 23 616 639 616 639 0.97
9 26 5.7e-05 0.0025 17.7 1.9 1 23 699 721 699 721 0.97
10 26 0.0055 0.24 11.5 4.6 2 23 733 754 732 754 0.96
11 26 0.033 1.5 9.0 0.7 2 23 766 787 765 787 0.96
12 26 0.0045 0.2 11.8 0.6 1 23 797 819 797 819 0.98
13 26 0.098 4.4 7.5 3.5 1 23 847 869 847 869 0.97
14 26 0.0021 0.093 12.8 2.2 1 23 880 902 880 902 0.97
15 26 3.6e-05 0.0016 18.4 0.4 1 23 910 932 910 932 0.98
16 26 0.00027 0.012 15.6 0.2 2 23 952 974 951 974 0.97
17 26 3.2 1.4e+02 2.8 1.4 1 23 992 1014 992 1014 0.87
18 26 0.00017 0.0076 16.2 0.6 2 23 1055 1077 1054 1077 0.95
19 26 0.0012 0.054 13.5 0.4 1 23 1098 1120 1098 1120 0.97
20 26 0.011 0.49 10.5 3.5 3 23 1202 1222 1200 1222 0.91
21 26 0.3 13 6.0 2.3 5 23 1232 1250 1230 1250 0.94
22 26 0.0076 0.34 11.0 0.6 2 23 1261 1283 1260 1283 0.95
23 26 2.7 1.2e+02 3.0 6.3 2 23 1300 1318 1300 1318 0.92
24 26 0.16 7 6.9 0.5 2 23 1390 1411 1389 1411 0.93
25 26 0.0027 0.12 12.5 0.5 2 23 1422 1444 1421 1444 0.97
26 26 6.6 2.9e+02 1.8 0.8 2 19 1482 1499 1482 1499 0.80

Sequence Information

Coding Sequence
ATGGCCCTCAAATTGGGAAAATGCAGGCTTTGTCTGAAGCTTGGAGacttttactccatcttcacaATGGACAACGCTTTGCAGCTTTCCGAAATGGCGATGGAATGTGCTCGGATTAAGATCTATGATGGAGATGGTCTTCCAGATAAAATCTGCTCGGAATGCGTGCAGAAGTTGAGCAGTGCGTATATTTTCAAACAGCAGTGCGAGCGATCTGACGCTGAATTGCGGCGGAACTACATACCCCCGCCAGGTTTCAGCGTAACTCCACCTCCGCCTAACAGACAAAGCAGCGACTCTGCCTTTTCTTCATCTCATACCGATTTTTCTCATCAATCCAAACCTTCAGCTGAGAAGGTCATCCTCGCAAGCAGAGAACGAAAACGGAGCCACGAAAGTGTCGACGATGCCTCCGTCAGCAGCCGATCTCACGACGATCAACCTACCATGTCTAAACGTGTAAAAGAATTACGAAAGTCACAGAAGAAACCTCATCACCAGTCTCCAAATACATCCATCATAGACTCTGATTATGAAGACAACAGCATGTCTCATTTTTCTGCAGAAACCGATTCTGATGAACCCCTTATACACAGTTACAAATGCAAATACTGCAGTAAAGAGTTTAAATCTGGTATAAGCCTTAGTAACCATTTGAGAATGCATACCAAAGAAAAAAACTTAGCGGAAAATACAGTTGTGGATACCCCAAAGAAAAGTGTGGGAGATGCCAATGACTCTGAAGATAAATTGAGTTGCGACAAATGCTCCAAAACTTTCAAGTTGAAGATAATGTTAAAACGACACCAAGAGTCTTGTAATAAAACTGCTCAAGTCTCACCTCAAAAAGAGTTGCTTATTTCGTTAGAACCTATTGATTCCGTGTTTCCTCCAAAGCCATTAGAACAAAGCAAGAAACTGGAATGTGAAATGTGTACTACGCGCTTTAAAACTGTTGAAAATCTAGAGAAACATATGAGAGTAATTCATGCAGCAGTTCTTAAGAAAGCAAGGTCaagcttagaaaaaaaatctgatgGAAAGATAAGTTTTCCATGCTTATACTGCCGCATGACTTTTGACGATTATTATGTCCATAGCGCGCATTTCGCAGCCTGTCCGAAGAAAGATGAAACCATACCCCTTCAATGTCCTATATGCGATAGAGTCATGTCCAAGAAGAGTTCTTATTTTGTCCACATAAAAACTATGCATTTTTGGCCCCGCGATACTACAACTGTTGCTGAGACAAAAGAAACATTCGATTGTCGAATGTGTAGTAAAAAACTAGCCTCTCAAGATCTATTGGTAACTCACTTGGCTGCTCATATGTCCAATATTGATGATGATGCAGCTGATAACATCTCCAGaCCAAGCACAATTGATGATACAGTATCAAACCATTCCGACTATTCAAGTTCTGTAGTGTCAAGTGGACCTCATAAATGCACTCATTGCGAAAAAGCATTCAAGTACAAGAAAGCGCTGCAAACGCATCTTATGATGAAGCACAGTGTGGAAGATGTTGAAGTAAAAACTGAACCACCCGACAAACCTACTACTAGtctacaaaataatttgtataaagAATCCGAATCTGACTCCAGTCCCGGAGAAGGTGATGACCTGACTTGCGATATCTGTGAAAAACAGTTTTCTTACAAGCGCTTATTACTTCATCATAAACGCACGAAACATAATATGAGCTCCGGTACGAAAAGAGCAAAAATCAATCTAAAAGATTGCATGGTTCGCTGTCTGATATGCGATGTAGAAATGAAAGTGTCAAACATAAACGAGCATAACCAGAAACATCTGTCAATGAACATCAAACCGCGAAACATGTATACTTGCGCGGAATGCAGTGAACAATTCAAGAGTTGTAGTGGCCTTGCGAACCACATCAAGCTAATTCACAGGCTAAAGCAACAGCCGCCGCAAAAGCAGCAGCCTCAGCAGTTCGAGGGAGCAGATCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGCGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGCTGACAGAAGGTGGCCCGCTTGTCGACCTAGCCGGATTTACATGCCACATCTGcggaaaaaaactaaaaacactcATATCGCTTAAGCGCCACGTCAACTGGCATACAAATGTCGGGaacaacatagaaaaaatcACGGAGTGCTTCGTGTGTAAGGAGAAATTCCGGTTCCAACGCCACTACAAATTGCACATGCGCGAGCACTACACGGATACGAATCTAGACCCTGTGCATCTAACTTGCGCTATCTGTGGTCGCCGAAGCAAACATCTTCGCGCTGCACAGGCGCATATGAATTTCCATAAACAAACTCGCTTCAAGAACAAAGACTACCAATGCTCCATATGCAAGAGGATCTTTCAGTACAGAAAGGTGTATCTCGCCCATATGGCTATACACTATAAGAGAGGGGAGGGTCAAGACGCTATTGTCGGCGATCGACCTCTTCAATCCAACAATACAGTCAGCAATGATGGGACCTATAAATGCCCACAGTGCGGTAAACTATGTGATTCTGAAAATTCTCTTAAGTGCCATGTTCGCTGGCACACCTCTAAATCCTCCCTGTATGGCTCGAGGCATGAGTGCACAATTTGCCAGCTCCAATTCACTAACAAGAGAAGGCTAGAAATCCACACAAGAGGTCATTATGAGGATGAAAATGGACCTTATAAATGTACTGTGTGTGGTAAAGGATACATTGATGAAGATTACTTTAGGAGGCATGTTAAAGGTCACAATTTTGATCACCAAAGCCATAAAAATCGTATagagaaattaagaaaaaataaggtgAAATGCCCTATTTGTTCAAGATTTTATCCAGACTTAGTGAAACTCATACGCCATTTGAGGAGATCTCATCCTGAAAGTAAAATGATTAAGGAAGATCCCGATGCCCCACCGCAACGTTATTACTCTTGCAAGTTATGTGCAAAAGTGTTCTTGGACGAGCGGAGATTCCAGCACCATGAGGAAGCTCACCTAAGGAAGCCACAATTCTTCAAATGCAAATTTTGCGGGATAAAAACCATGtcactaaaaagtcatcgtgtGCATGTCCACCAAAAACATATGACTGTCAAATACTTGGATAACCCACTGAAATGTCCTTATTGCGAAGAGAAATTCATCCGAGGCTACTTACTTCAGCACCATATTCGTGACGTGCACGATATTGATGAAACTTGGATAGCCGGGCCTTCAGAACAACCGCTTGGGCCATTGAAAGAATTTCAATGTTCTGTGTGCCTCAAAGTGCTGGCCTCGAAAGGAAATTTTGAACGACATCTCGATTATCATAATTCACTACGATGCAATTACTGTTTTGACTACTTCAGCTCTCTGAAATTCTTAGAAGGTCATTTGGCATTTAGCTGTGAAAAGAAGAAACTGATTGGTAATACGGAACCCTTTACTAAGAACATCAAATGCAACATTTGTTACAAAGCATTCCATCTCCAAGTGAAACTTGATTGCCATTTGTTCACACAACATAACATTAAAGTGTCAAAAGAGGCAGAGGAAGGAAAACAGGATCATTTGTGTGATTATTGTTTCAAAGTTTTTGAGAACAAGCATGCCCTAGAAAGCCATAAAGTTTACCACCGTACTATTGGCTACTTTGGGTGTATTTACTGCAACAGAAAATTTAACACcttagttttatttaacaaacataAAACAAGCCATCTCTACAGGCTTCACTCTGACGACCCGGTTAAATGTGAACATTGCGATGAAACTTTTGTCTTGTTCAAAGACATGATCGATCATATGAAAGACGTACATGGAGACGACAAAGATTGGGTAGTTATGCCCAAAGAATCTATAGAGGAAACTTGTCATttatgcaagaagacgttcTATAATCTTCATCGGCATTTAGCGTATCACGAGGAGAATCGTTGCAAGAAGTGTGGCGAATATTTCTTTTCACGAATAGATTGCGATAATCATCTTTGTGCGATTGAGAGCGACGATGAAGTGACCGAAAAAGCTAATGATATCCGGCCTAAATACGAAGAGTGCACATTTTGCTTCAAGCCGATAACTAGGAAGAGCACCAAAAAATTACATGATAACTTACACAGTGTATCAGGAGCGATTTCGTGCCGCTTTTGtccacttaaatttaaaacaatggaTGCGTTCAACATTCACGCATTTTCACACAGAAGCAGAAAGTATAACAACAAACCTATAAAGTGTAGAATTTGTCGTGAAAAGTTTATACGCTATGGACCTTTTGTAAAGCACATGAAAACTGCACATAAATCGAAGAAAAAAATGCACTATCGCGCTAGAGTTAAGCACGAACGTTGCGTTGTTTGCGGCGACTATTTCCCGAATTTACACAATCACTATCGCAGTCATTTGCAAAACCAATGCCAGTTATGTTCCAAATACTTTACGTCTGTAAAGGTATTTTCTCAACATGACTGCAACAAAGAGGACTCTGATCCATCCAAAGTGTTTACTAGTGATGAAAATTTGCCAGCCCTTATTAAATCTTATATTCCTAAGGATGATAAAGATGATGAGAAGTTTTATGGTTACACTGACGACGAGGAAGATGAAgaagaaaacaattttgctgATAATGATGAGAGTCAGAACTCTGCTGACATTGAAAACATGGTCGTCCAGCCTTTTATAATATCGGATGTGCTGTCTCTttacgaaaagaaagaagaaCTAATTGCAATGTATCAAAATAAGGATGATGATAgtaagaagaaagaagaaataaacaaaGCTAAGAAATCTGATGGGAACAAAGACAATGGGCCGGAGAGTGATGACGACGTCGTGAATTTATCGGACGATGACGCTGTAGACGTGACAAGCATTTGCCCCGTTATTACTATAGACGAtgattaa
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTMDNALQLSEMAMECARIKIYDGDGLPDKICSECVQKLSSAYIFKQQCERSDAELRRNYIPPPGFSVTPPPPNRQSSDSAFSSSHTDFSHQSKPSAEKVILASRERKRSHESVDDASVSSRSHDDQPTMSKRVKELRKSQKKPHHQSPNTSIIDSDYEDNSMSHFSAETDSDEPLIHSYKCKYCSKEFKSGISLSNHLRMHTKEKNLAENTVVDTPKKSVGDANDSEDKLSCDKCSKTFKLKIMLKRHQESCNKTAQVSPQKELLISLEPIDSVFPPKPLEQSKKLECEMCTTRFKTVENLEKHMRVIHAAVLKKARSSLEKKSDGKISFPCLYCRMTFDDYYVHSAHFAACPKKDETIPLQCPICDRVMSKKSSYFVHIKTMHFWPRDTTTVAETKETFDCRMCSKKLASQDLLVTHLAAHMSNIDDDAADNISRPSTIDDTVSNHSDYSSSVVSSGPHKCTHCEKAFKYKKALQTHLMMKHSVEDVEVKTEPPDKPTTSLQNNLYKESESDSSPGEGDDLTCDICEKQFSYKRLLLHHKRTKHNMSSGTKRAKINLKDCMVRCLICDVEMKVSNINEHNQKHLSMNIKPRNMYTCAECSEQFKSCSGLANHIKLIHRLKQQPPQKQQPQQFEGADLADFCEVVVTKAEPLDAIQSHNGFGEVPLTEGGPLVDLAGFTCHICGKKLKTLISLKRHVNWHTNVGNNIEKITECFVCKEKFRFQRHYKLHMREHYTDTNLDPVHLTCAICGRRSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRIFQYRKVYLAHMAIHYKRGEGQDAIVGDRPLQSNNTVSNDGTYKCPQCGKLCDSENSLKCHVRWHTSKSSLYGSRHECTICQLQFTNKRRLEIHTRGHYEDENGPYKCTVCGKGYIDEDYFRRHVKGHNFDHQSHKNRIEKLRKNKVKCPICSRFYPDLVKLIRHLRRSHPESKMIKEDPDAPPQRYYSCKLCAKVFLDERRFQHHEEAHLRKPQFFKCKFCGIKTMSLKSHRVHVHQKHMTVKYLDNPLKCPYCEEKFIRGYLLQHHIRDVHDIDETWIAGPSEQPLGPLKEFQCSVCLKVLASKGNFERHLDYHNSLRCNYCFDYFSSLKFLEGHLAFSCEKKKLIGNTEPFTKNIKCNICYKAFHLQVKLDCHLFTQHNIKVSKEAEEGKQDHLCDYCFKVFENKHALESHKVYHRTIGYFGCIYCNRKFNTLVLFNKHKTSHLYRLHSDDPVKCEHCDETFVLFKDMIDHMKDVHGDDKDWVVMPKESIEETCHLCKKTFYNLHRHLAYHEENRCKKCGEYFFSRIDCDNHLCAIESDDEVTEKANDIRPKYEECTFCFKPITRKSTKKLHDNLHSVSGAISCRFCPLKFKTMDAFNIHAFSHRSRKYNNKPIKCRICREKFIRYGPFVKHMKTAHKSKKKMHYRARVKHERCVVCGDYFPNLHNHYRSHLQNQCQLCSKYFTSVKVFSQHDCNKEDSDPSKVFTSDENLPALIKSYIPKDDKDDEKFYGYTDDEEDEEENNFADNDESQNSADIENMVVQPFIISDVLSLYEKKEELIAMYQNKDDDSKKKEEINKAKKSDGNKDNGPESDDDVVNLSDDDAVDVTSICPVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-