Hkah006304.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:1152153-1177768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0047 0.21 11.7 3.6 1 23 228 250 228 250 0.96 2 16 0.0089 0.39 10.8 0.1 2 23 278 300 277 300 0.90 3 16 0.0022 0.099 12.7 3.7 2 23 321 342 320 343 0.94 4 16 0.0015 0.065 13.3 1.1 1 23 348 371 348 371 0.95 5 16 0.00036 0.016 15.2 1.2 1 23 376 399 376 399 0.96 6 16 1.3e-06 5.7e-05 22.9 1.1 2 23 402 424 402 424 0.98 7 16 1.6 73 3.7 2.4 2 21 431 450 430 451 0.93 8 16 0.059 2.6 8.3 1.8 1 23 506 529 506 529 0.95 9 16 0.012 0.52 10.5 0.1 2 23 557 579 556 579 0.93 10 16 0.0048 0.21 11.7 0.1 2 23 602 624 601 624 0.95 11 16 6e-05 0.0027 17.7 0.3 3 23 631 652 629 652 0.93 12 16 0.015 0.65 10.2 2.4 2 23 657 679 656 679 0.94 13 16 0.0079 0.35 11.0 4.2 1 23 684 707 684 707 0.97 14 16 7.8e-06 0.00034 20.5 5.0 1 23 711 734 711 734 0.98 15 16 0.00027 0.012 15.6 0.3 2 23 741 762 740 762 0.96 16 16 6.3e-05 0.0028 17.6 1.0 1 23 768 790 768 790 0.98
Sequence Information
- Coding Sequence
- ATGATGAATTTCGACGAGATCGTTGTGAAGGAGAGCCCCGGGCTCTGCCGGTGCTGTCTCTCCGAAGGTTGTTATAAAGATATGGGCACTGATTATACGTGGATGTCAGAACGCGAAGTTTATGCAGATATGCTGTTAGAATGCTTTGATATTAGCATATCACAACACAGTGATGGCCCCAACGGCCAGAACCGCCTCATCTGCGAAGTCTGCATTACGCGTCTACGCGACGCTTGTAATTTCAAGAAACAAGTCCTTGATTCTGAGAAAAGATTTGTTGATATGCTGGCCAAGGGGAAATTTAGACCTAaagTATTAATCTATCAAGCCGCACAACCTTCAATGAAGGCAGAGGCGTTACTCGAGCAGAACATTGAAGGCGTAGAAGCCGAAGTAGAGTATCTAGAGGACATAGACTTCGATGATACAGAcgACCTCCCTCTAAAACTGCCCACGGAACCATCAGCGTCGGAGCCTCAAGTAAAGAAAGGCAAGCGCGGAAGACCCAAGAAGTCCACcacagaaaagaaaaagaaggtTGACGACAAGCCGAAGACTAAAGTATCAAAAGaTGAATATCCATCAGGGCCGTACGATGGTTTCGCGTCAGAACGTCGCCGGAAAAATATGCAAATTCTCTTCAATCACACTTCCATTATCCCATTCAAGTGGCGAGGAAAGTACCTTTGCTTTTACTGCGGTAAATTCTATAACGAATACCAAGATttcaaaaaacatacaaaatcacACGGTCTGTGTACCACCAAAGATTATGCATTGAAAATTATCAAAGGGAATCATATCGAAATCAAGATTGATATTTCAGAGATGACTTGTGATATATGCAATGAATCCTTTAAAAGTTTTGACGAAATAGTTGACCATTTGATAGCGGAACATTGTTTAGAATACGACAAGACAGTTGAAGTGCCTTTTCAGCAATATAGATTGTCAGACTGCCAATGTCTGTACTGCGGACTACAATTTACGTATTTCGGATACCTGATAACCCATGTTAACACGCATCATCCTCAAAATCGTTTTATTTGCAACGATTGTGGAGCGTCGTTTAACAAGAAAAGAGATTTGTCATTTCATTTGAGGAATTATCACAAACTTGGAGGATATTCTTGTGACCGATGCCCTAAGTTATTTGAAACAAACCGATTGTTACTAAGGCACCAGAATAACTATCATTTTAGAAAATGCAAAGATTGCAATACAAGTTTTGCAACTTACAGTCTGTTACAAAAACATATACAAACCGAGCATCCAATTGATGACAGCCTGAAATGCAAATTTTGTTCCAAAGAAATGCATTCAAAACAGGGTTTAAAACAGCATCTTAATAAATGCAAGGTGAAACTCCTTGCTGAAGATCCTACGGAGGAATTAGATGATACTTTCGACGACAAAATCGAGCCCCaaaagagacaaaatgtcaACCAAATCAGACAAAATATTATCTGTGTTCTAAACATGTCTACAGCGATACCCTTTCGATTTTTCGCCAAATATTCCTGTTTTTATTGCTCAAAAAAGTTCTTAGACTTCGAAGAACTTAAAGACCACTCAATCACTAATCACcctatttgcgatttaaatggaaaatatatgaaaacatGCAAAGCAGATCGAACTTGTGTAAAAATTGACATATCCACACTAAATTGCAAGATTTGTAAACAATCGATATCGGATTTAGACGAACTTATAgatcatttaattaataaccatAACGCTAATTATGATAAAACTTTAACCAACTGCTTACAACCGTTTCGGattttaaaagacaatgtccCATGCCCTTACTGTCCTCTGAGTTTCcgttatttcacaattttactGCGTCATATAAACTCTGAGCACAGCGACAACAAAACTATATGCGATTCCTGTGGACGTAGCTTCAAAAACGTTACTAATTTGAAAGTTCACATATCCTACGCTCATAAAGGTTTAGTCGAATGCAGTATATGCTTCGCAAAATTCAAGAATCAGTGGTGTTTATCTCGTCACAAAGCCAAGAACCACGATTCAAAGGAGTTTCAGTGTCCAAAATGTCCAGAACTCTTTCATTCCCAATATCATAAGCAAAAGCATTTAATAAAAGTCCACAATACGGGTCACAAGTGTACTTACTGCGGGCGTATGTTCACAAGAAACTCGTTCATGAAGGATCACATAAGAAGAACGCATTTGAAGGAAAAGAATGTTCCATGTTCCGTGTGCAATGAGAAATTCtttgacaattatttattaaggatGCACATGGTCAAACATGAAGGTGACAGAAAGTTTACTTGTAGCGTTTGCGGTAAGCTGTTTTTGCGACGTAGCAATTTATATTCTCATATGGAAATGCATAAGAAATATGGTCACGTAGAGACGACTACGTAA
- Protein Sequence
- MMNFDEIVVKESPGLCRCCLSEGCYKDMGTDYTWMSEREVYADMLLECFDISISQHSDGPNGQNRLICEVCITRLRDACNFKKQVLDSEKRFVDMLAKGKFRPKVLIYQAAQPSMKAEALLEQNIEGVEAEVEYLEDIDFDDTDDLPLKLPTEPSASEPQVKKGKRGRPKKSTTEKKKKVDDKPKTKVSKDEYPSGPYDGFASERRRKNMQILFNHTSIIPFKWRGKYLCFYCGKFYNEYQDFKKHTKSHGLCTTKDYALKIIKGNHIEIKIDISEMTCDICNESFKSFDEIVDHLIAEHCLEYDKTVEVPFQQYRLSDCQCLYCGLQFTYFGYLITHVNTHHPQNRFICNDCGASFNKKRDLSFHLRNYHKLGGYSCDRCPKLFETNRLLLRHQNNYHFRKCKDCNTSFATYSLLQKHIQTEHPIDDSLKCKFCSKEMHSKQGLKQHLNKCKVKLLAEDPTEELDDTFDDKIEPQKRQNVNQIRQNIICVLNMSTAIPFRFFAKYSCFYCSKKFLDFEELKDHSITNHPICDLNGKYMKTCKADRTCVKIDISTLNCKICKQSISDLDELIDHLINNHNANYDKTLTNCLQPFRILKDNVPCPYCPLSFRYFTILLRHINSEHSDNKTICDSCGRSFKNVTNLKVHISYAHKGLVECSICFAKFKNQWCLSRHKAKNHDSKEFQCPKCPELFHSQYHKQKHLIKVHNTGHKCTYCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGDRKFTCSVCGKLFLRRSNLYSHMEMHKKYGHVETTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -