Hkah008647.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:315879-321227[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.8e-06 0.00035 20.5 3.4 1 23 305 327 305 327 0.97 2 11 4.5e-07 2e-05 24.3 1.7 1 23 333 355 333 355 0.98 3 11 0.012 0.51 10.5 2.5 1 23 439 461 439 461 0.97 4 11 4.2e-06 0.00019 21.3 2.9 1 23 466 488 466 488 0.97 5 11 0.00065 0.029 14.4 4.7 1 23 503 525 503 525 0.97 6 11 7.6e-07 3.4e-05 23.6 3.5 1 23 531 553 531 553 0.98 7 11 3.8e-06 0.00017 21.4 1.0 1 23 558 581 558 581 0.98 8 11 3.2e-06 0.00014 21.7 1.4 1 23 587 609 587 609 0.98 9 11 3e-05 0.0013 18.6 5.2 1 23 618 640 618 640 0.98 10 11 0.0013 0.059 13.4 6.7 1 23 648 671 648 671 0.93 11 11 0.00016 0.0071 16.3 0.6 1 23 681 703 681 703 0.98
Sequence Information
- Coding Sequence
- ATGTCTGTTCCTGATGTCGTAAATCAGGAAGCAAATATACCACAAACCACGTTGGCCTCTGAAGTACTATTTGTTCAAATTCAGTTAGAGCCTGAAGGATTACCCAACACAGAAGGGCATGAAGTATATGATTTGTATGTTGGGCCTGGTGTCCTACTACCTCCTGATGATGTTCGGGAACCTGATGAATCTCAAAGTGTACAGGTCGAGCTACATCAGGTTCCTGTCGATGATGGAACAAAACAAGACACAATGGAACTTTTACAGCAGCCAGAAACTCTATCGAATGTTCAGCTTACATCTAAAGAAACAGAACAAGACTTAATGGTTGCAAACGAATACATTAAACAAGATATAGCAAATACAGCTTTATTATCTACAACTGGAAGACTTCCTATGCCGAACTTAGAACTCTCCAACACATCGTCACCAAATACGTTCCTAAGCGACCTGAATTCAACGTCTCCCTTCGACTTTTATCATGTTCTTGGTACACCTAGTGAGGGGCCCTCTTACACTGGATCTTCCGGCTCATGGGATCCATACGAAGATATTATAGTGGACATGGATAGCGTTTATAATGCCTGTTTACAGGCAGGAACTTCTCAGCAGCTTCAAGAGTTGACAACGAAAAGCGAAGAcagtgaaaaaacaaacatagaaacaaatatacatgaaaacaatattaaaaccaAATACAGTGAACTAACCAATGTaaagacaaacaaaataagtgaagaaaaacaattttacgaaatctgtaacaaagatttacaaataaatgaatatctaGTTATCTACACTCAGGATGGCACGTTGAACAATGAACAATTCAAAGAAATTGAACCAACGAATACACCGAAATACAACAAaccatacataaaatataaaaaggtaaaagaagaagaaaggcaTATTTGTGAAACATGTAACAAAGAATTTAGGAGAAAATATAGTTTGAAAGAACATCTGCTCACCCATAATGTCAATAGAccgtatgtatgtaatgtttgtGACAAAGGTTTTGTCAGAAAAGATCATCTAACTAGACATTCAAAGATTCATAAACGTAACAAATATGTCTGCGAATGTAATGTTTGTACAATACCTGCCAACCACAAGGCTTCTACTACAGAAAAATGCAGTTCAGCGAATTTGCATCAAGGTCACGAAATCAATCAAGACCTGACTACTGCCGGGCCTAATGTAGAACAGCAGTCAGTTGATGTGGCACACACTTGCGATTTAGCTCAACCAACTGAACAACCAGAAATAAATGGTAACAACAACATTGACGAATCGTGTCAACGGAAATTTACATGTGAATTTTGTAACAAGGAATTAAGTTCTTTGCGTTATTTACATGAACATCTGCTTAATCATACTGGGAGACCATTCATATGCCATATTTGTAACAAATCCTATATTACAAAAGGCCACCTTAGTAGACATTTAGAGATTCATGATTCCAAtcgaagtaaaacaaaaaaaataagttcaaaacaatataattgtGAGCTTTGTGACAAACAATTCAGAAAAAAACACAGTTTTAATGAACATCAATTTATCCATACTGGGGAAAAACCATTTGcatgtaatatttgtaatacatGTTACAGCAGAAGGGGCAGCCTTAATAGACACATGAAGACTCATAGATATAACCAATTCAAATGTGATATTTGTAACAAAGATTACAGCACCGAACGAGCACTTAAAAGACATTTACTTACTACACACACAAAATTGAAGGAATTTATTTGTGACACTtgtaacaaaacatttattaataaacaatatttaataagtcaCTTAAGAAGTCATTCTGTcgaaaatgtagaaaaaaaatttgtttgtaaaatttgtaaaaaatgttacaaaaagaaGTATAGTCTTAAACTACATTTAGCTACACATACTAACAAAGTACAAGCACCATTTATGTgttatatttgtaacaaaagtTATCGTCAGAAACAGCATTTAAGTCATCATTTACTATTCAAACATACTAAAGagaaacaagtaaaaaaactatttcagtGTGAAATTTGTAACGAACTTTGTAAAGATAAAGACTTATTGGAACaacatttattaattcattCTGAAGAAAAAGAAGTAGAGAAACCATGTGCTGTTCAAAATTATCTTACTCTGCAGACCTATGTTCAACAGTGGACACCTTTCGGCTGA
- Protein Sequence
- MSVPDVVNQEANIPQTTLASEVLFVQIQLEPEGLPNTEGHEVYDLYVGPGVLLPPDDVREPDESQSVQVELHQVPVDDGTKQDTMELLQQPETLSNVQLTSKETEQDLMVANEYIKQDIANTALLSTTGRLPMPNLELSNTSSPNTFLSDLNSTSPFDFYHVLGTPSEGPSYTGSSGSWDPYEDIIVDMDSVYNACLQAGTSQQLQELTTKSEDSEKTNIETNIHENNIKTKYSELTNVKTNKISEEKQFYEICNKDLQINEYLVIYTQDGTLNNEQFKEIEPTNTPKYNKPYIKYKKVKEEERHICETCNKEFRRKYSLKEHLLTHNVNRPYVCNVCDKGFVRKDHLTRHSKIHKRNKYVCECNVCTIPANHKASTTEKCSSANLHQGHEINQDLTTAGPNVEQQSVDVAHTCDLAQPTEQPEINGNNNIDESCQRKFTCEFCNKELSSLRYLHEHLLNHTGRPFICHICNKSYITKGHLSRHLEIHDSNRSKTKKISSKQYNCELCDKQFRKKHSFNEHQFIHTGEKPFACNICNTCYSRRGSLNRHMKTHRYNQFKCDICNKDYSTERALKRHLLTTHTKLKEFICDTCNKTFINKQYLISHLRSHSVENVEKKFVCKICKKCYKKKYSLKLHLATHTNKVQAPFMCYICNKSYRQKQHLSHHLLFKHTKEKQVKKLFQCEICNELCKDKDLLEQHLLIHSEEKEVEKPCAVQNYLTLQTYVQQWTPFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -