Hkah009438.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:3716179-3718220[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2e-05 0.00096 19.1 1.0 2 23 78 100 77 100 0.94 2 13 2.5e-05 0.0011 18.9 1.8 2 23 108 130 107 130 0.96 3 13 0.00027 0.012 15.6 1.9 2 23 137 159 136 159 0.93 4 13 1.4e-07 6.4e-06 25.9 0.6 3 23 168 189 167 189 0.96 5 13 3.4e-05 0.0015 18.4 0.9 2 23 197 219 196 219 0.95 6 13 0.00039 0.017 15.1 1.8 1 23 226 249 226 249 0.97 7 13 0.00092 0.041 13.9 5.1 2 23 255 277 254 277 0.93 8 13 1.4e-05 0.0006 19.7 0.5 2 23 293 315 292 315 0.95 9 13 0.0014 0.061 13.4 2.2 3 23 324 345 323 345 0.96 10 13 1.1e-05 0.00048 20.0 1.2 3 23 353 374 352 374 0.96 11 13 0.41 18 5.6 5.0 2 23 382 404 381 404 0.88 12 13 7.4e-07 3.3e-05 23.7 2.8 1 23 410 432 410 432 0.98 13 13 0.02 0.9 9.7 8.3 1 23 438 461 438 461 0.90
Sequence Information
- Coding Sequence
- ATGGACCAAACAGCCAGACTCGAACCAGAGATAGAACATATTAAAGTAGAAGTTAAAATTGAAGATGTTGATTTCAATGAAGATGTTTCCATATTTCCTGGCACTGAAAAGACACAAGGAGATGAATTCCAACCAAAATTTAATCTTCAAGCTTTAGTAGTACAAGGACCATCAAGTTCAATGCAAGATACTGCAGAGAAAGTGTatcaaaatggaaaaataaacaGAGTAAAATGTCCTCAGtgtgaaaatacttttaaaaatagagCAAATTTAAAACAACACTTGAAATTTGTACATTCAAAGGAAGATGATGCAGTTGAATGCAAAGTATGCTATCGTAGTTTTAAATCCATATCTCACTTGCGTACCCACTTAAACTCTGTACATGCTGAGAACAATGAAGTGACTTGCAATGTATGTCAGAAAACATTTATGAATAAGAAAAAGTTGAgtaatcatatattttattctcatcCTGAACCACAAGAAAGTGTAGCTTGCCAAATATGTAacaaagttttcaaacaaaagtacaatttgaaaatacacATTCGCCAAGTCCATTCTTCTGAAGAAAATTCAGTGCAATGTGAAACAtgtaaaaaaactttcaaaaatgATATGCTACTGCAACGGCACATTAATTGGACTCATCCAAGTGATGGACTAATGTATAGATGCCAAGAATGTGGCCGTACACTTTCTTCAATTGCATGTTACAAGAAGCATATTCAAAATGTACATGCGTCTCAGGCTTGTATATGCCAAATATGTTCGAAATcttttaaaactattaaaactcTTCAAAGACATGAAAAACATGTCCATCAAGGAGTGAAAACTGAACCGAAAAAATACAAAGTTGGTGAATTAAAGTGTTCGGATTGTGATAAATTTTTTGCAACAAATACATCTTTGTTATGGCATTATGAGAGGGAACATTCCGAATTTAGAAGAATAAATCTTTGTACTTTATGTGATAAAGAATTATCTGACCATGCGTCTCTTAAACGCCATATAGAAATTTGTCACTCTGTTCAAGAGCCAGTTGCTTGTGAAATCTGTTCAAAGATTTTCAAGTCGCAAATACATTTGCAAAGACATGTAAAAGTTACCCATGCTCCTCCTGAAGCTGCCCAAAGATGTGAAATCTGTAATAAAGTCTTCAAATGTGTTATGCACCTGAGAATTCATAATCATTCTGTACATCCAAAAGAAGGTTCTTTCTCTTGCAATGTAtgcaacaaaatatttagttCAAAAAAATATCTCCTGAAGCACTTGAAAACccatactaatttaaaaattcaccCTTGTCATATCTgtgacaaaaaatttaaaactgttcATGATGTAACAAGGCACTGCAAAAGGGTTCACAGTGAAATAAATAGAAGTGGTATTAAAccataa
- Protein Sequence
- MDQTARLEPEIEHIKVEVKIEDVDFNEDVSIFPGTEKTQGDEFQPKFNLQALVVQGPSSSMQDTAEKVYQNGKINRVKCPQCENTFKNRANLKQHLKFVHSKEDDAVECKVCYRSFKSISHLRTHLNSVHAENNEVTCNVCQKTFMNKKKLSNHIFYSHPEPQESVACQICNKVFKQKYNLKIHIRQVHSSEENSVQCETCKKTFKNDMLLQRHINWTHPSDGLMYRCQECGRTLSSIACYKKHIQNVHASQACICQICSKSFKTIKTLQRHEKHVHQGVKTEPKKYKVGELKCSDCDKFFATNTSLLWHYEREHSEFRRINLCTLCDKELSDHASLKRHIEICHSVQEPVACEICSKIFKSQIHLQRHVKVTHAPPEAAQRCEICNKVFKCVMHLRIHNHSVHPKEGSFSCNVCNKIFSSKKYLLKHLKTHTNLKIHPCHICDKKFKTVHDVTRHCKRVHSEINRSGIKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -