Hkah008534.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyposmocoma kahamanoa
Gene Symbol
-
Assembly
GCA_003589595.1
Location
NW:140936-143079[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 7.8e-07 3.5e-05 23.6 4.8 1 23 91 113 91 113 0.99
2 13 0.0013 0.056 13.5 0.9 1 23 119 141 119 141 0.97
3 13 2.5e-05 0.0011 18.8 2.5 1 23 147 169 147 169 0.99
4 13 0.00012 0.0052 16.8 4.4 1 20 175 194 175 197 0.95
5 13 2.9e-05 0.0013 18.6 5.6 1 23 203 225 203 225 0.99
6 13 3.4e-05 0.0015 18.5 3.5 1 23 231 253 231 253 0.97
7 13 0.00041 0.018 15.0 7.0 1 23 259 281 259 281 0.97
8 13 0.00029 0.013 15.5 5.5 1 23 287 309 287 309 0.99
9 13 1.1e-05 0.00047 20.0 0.4 1 23 315 337 315 337 0.99
10 13 9e-07 4e-05 23.4 0.3 1 23 356 378 356 378 0.98
11 13 6.6e-05 0.0029 17.5 3.5 1 23 385 407 385 407 0.97
12 13 2.7e-05 0.0012 18.7 3.0 1 23 413 435 413 435 0.99
13 13 0.0012 0.053 13.6 2.9 1 23 441 465 441 465 0.96

Sequence Information

Coding Sequence
ATGTCGTACACGGACCTACAAGATGTTATGAACGTTAAGAAGGAGGCAAGCGAATTAGAAGACAACCCTTACTGCCCTTTGAGTGTCCACTTCAAACAAGAAATTAGTGTTGcggaagaaaaacaaaagaaggaGGAGTTGGATCTGTATAGAGATCATGAAATTAAGGAAGAGTTAGTCATAGGACCTGTGGTGTTGCAACCTACTGATTTAGAACTAGCAAAATGTGTGCAAAACACATCTGATGGGTTGAATGTTGATACTCGACCATACAAGTGTAATATTTGCACTAAATGCTTCATAGACACctatcaacttaagtctcatTTAAGGACTCATACTGGAAAGAAGCTGTTTGCATGTGAACaatgtaatgaattatttattcataaagtaagttataatatacatttattaactCATACTGGAGGGAGACCATTTAAATGTGAGTACTGTAACAAAGTCTTTAAGTATAAATCAATTTTTAGTGCACATTTAAACACTCATACCAGAGAGAAGCCGTTCAAATGTGAACATTGTAATGAATCTTTTACCCGTAAAGCAAGTTATAATAAACATGTACCACATCATTTTGGAGAGCGACCGTACAGGTGTCAGCACTGTAACAAAGTTTTTGagtttaaatcaaaatttaattcacatttattgactcatactggagagaaaccGTACATTTGTGATACTTGCAATGAATGTTTTAGAAAGAAATTTGATCTTAAAACTCATATAATGCTCCATACTGGACAAAAACCATACAAATGTAACATTTGCAATGCATGTTTTACATTGAAAACCCATCTTAAACATCATGTGTTGCTCCATACTAGTCAAAAACCGTACAAATGTGACcattgtaacaaattttttgCTTGGAAATCAAGTTATCGTTATCATTTAAGGACTCATTCTGGACAGACACCATATAAGTGTGATCTCTGTACCAAAGTTTTTCCATACAGATCAGGTATTATTAACCATATAAAAACTCATACCAGAGTGAAATCATACAAAATTGACCTCTGCAACAAAGTTGAAAAAAAGTGTTACATATGTGACTATTGTAACAAATTGTTTCCTTACAAATCAGCTTTGATTATACATATAAGGACTCATACTAGAAAGAAACTGCTGTTCAGATGTGAACAATGTAATGAATGTTTTACCcgtaaaataagttataataaacaTGTAATGGCTCACACTGGACAGAGACCATACAAATGTGACTATTGTAACAAGGAATTTGACTATAAATCAAGTTTTGATACACATTTAACGACTCATACTGGAGAAAAACCACACAAGTGtgatatttgtgaaaataaaagttataaaagaaaacaaacccTTAAGgctcatataataaaatatcatgttGAGAAAATGTCGACTTGTCCCATGGTCCAGTTGTCCATAACATTAAAACAACTACAGAAAAAGTAG
Protein Sequence
MSYTDLQDVMNVKKEASELEDNPYCPLSVHFKQEISVAEEKQKKEELDLYRDHEIKEELVIGPVVLQPTDLELAKCVQNTSDGLNVDTRPYKCNICTKCFIDTYQLKSHLRTHTGKKLFACEQCNELFIHKVSYNIHLLTHTGGRPFKCEYCNKVFKYKSIFSAHLNTHTREKPFKCEHCNESFTRKASYNKHVPHHFGERPYRCQHCNKVFEFKSKFNSHLLTHTGEKPYICDTCNECFRKKFDLKTHIMLHTGQKPYKCNICNACFTLKTHLKHHVLLHTSQKPYKCDHCNKFFAWKSSYRYHLRTHSGQTPYKCDLCTKVFPYRSGIINHIKTHTRVKSYKIDLCNKVEKKCYICDYCNKLFPYKSALIIHIRTHTRKKLLFRCEQCNECFTRKISYNKHVMAHTGQRPYKCDYCNKEFDYKSSFDTHLTTHTGEKPHKCDICENKSYKRKQTLKAHIIKYHVEKMSTCPMVQLSITLKQLQKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-