Hkah007795.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyposmocoma kahamanoa
Gene Symbol
-
Assembly
GCA_003589595.1
Location
NW:936-4251[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.9 1.3e+02 2.9 1.0 7 21 103 117 97 118 0.79
2 16 0.00013 0.0057 16.6 7.1 1 23 137 159 137 159 0.98
3 16 5.4e-06 0.00024 21.0 6.1 1 23 165 187 165 187 0.99
4 16 3.3e-06 0.00014 21.6 6.8 1 23 193 215 193 215 0.99
5 16 2.3e-07 1e-05 25.3 1.2 1 23 221 243 221 243 0.98
6 16 0.00085 0.037 14.1 3.9 1 23 249 271 249 271 0.97
7 16 9.9e-05 0.0044 17.0 9.4 1 23 277 299 277 299 0.98
8 16 0.026 1.2 9.4 6.0 1 23 305 327 305 327 0.98
9 16 0.6 26 5.1 3.1 5 23 337 355 335 355 0.96
10 16 1.7e-07 7.5e-06 25.7 1.7 1 23 368 390 368 390 0.98
11 16 0.018 0.81 9.9 3.5 1 23 396 418 396 418 0.97
12 16 0.0017 0.077 13.1 12.7 1 23 424 446 424 446 0.98
13 16 0.00025 0.011 15.7 3.8 2 21 452 471 451 472 0.93
14 16 2.6e-06 0.00012 21.9 2.7 1 23 479 501 479 501 0.98
15 16 6e-06 0.00027 20.8 3.4 1 23 507 529 507 529 0.98
16 16 6e-06 0.00027 20.8 3.4 1 23 535 557 535 557 0.98

Sequence Information

Coding Sequence
atggataattttacaaaactgaTGCTGGCTCAAGCCATGACCGTCAAGGTGGAAGCAAGTGCATTAGTTATCAGCCCTGTGGATTTACATACGAATGTCCACATTAAACAAGAGCCAGTTGGTGCTGCAGAAGAAGAACAAAGGAATATGGAGGAGGAGGATCTGTATGCTGATCATGAAATCAAGGAAGAATTGGCCATAGGACCTGTGGTGTTGCAGCCTACTGATTTAGCTCAAGCAAGATACATGCAGAACACACCTGATGGGTTGAAAGTTGATACTCgaccatacaaatgtgatacTAACACTAAATGTTATACAGGGAAATACCATCTTAAGCTTCATAAAATAACTCGTACCAGAGAGAAGACGAACCAAAATTTAAGCACTCAGACAGGAAAGAAACGGCACAAATgtgatatttgcaataaatgttttgcaACAAAATATTGTGTTAAGCAGCATATAATGGTGCATACTGGAGAGaagccatataaatgtgaccactgtaacaaagtttttgtttataaatgcaATTTAAATACCCATTTAAAGATTCACATGAGAGAgacgccatataaatgtgaccactgtaacaaagtttttgcttataaatgcaatttaaatacacatttaaagACTCACATGAGAgagaaaccatacaaatgtgtCTACTGTAATAAAAGTTATGCGTctaaatataacttaaatagACATTTAATTGTTCATACTAGAGACAAACCCTATGAGTGTGATATTTGCAGTAAACATTTTGCAACAAAATATACTCTTAAGTGTCATATAATGGCCCATACTGGAAAGAAACCACATAAATGTCACCACTGTAACAAAGTTTTTGCTTATAAATGCAATTTAAGTGCACATTTAAAGATTCATACAGGAAAGAAACCATACAATTGTGACCACTGTAACAGAGATTTTGCTTGTAAACAGTATTTAAAGACACATTTAAAGATTCATGTGGAGAAGGTACCATACAAACGTGACCACTGCAGCAAAGGTTTTGCTTGTAAACGGTATTTGAAGACACACTTAAAGATTCATGTGGACGAGGAAAAGATTCACGTGGCCGAGGAATCATACAAATGTGACTACTGTAATAAAAGTTATGcgtataaatataacttaaatagACATTTAATTGTTCATACTAGAGACAAACCCTATGAGTGTGATATTTGCAGTAATCATTTTGCAACAAAATATACTCTTAAGTGTCATATAATGGCCCATACTGGAAAGAAACCACATAAATGTTACCATTGTAACAAAACTTTTGCTTATAAATGCCATTTAAGTAGACATTTAAAGATGCATACAGGAAAGAAATGCAAATGTGACCACTGTAACAAAGGTTTCCCTTCTAAACACTATTTAAATACACACTTACTGATTTATATGGGAAagaaaccatacaaatgtgaccAGTGTAACAAAGGTTTTACTTCTAAATGGTATTTAAAGACACATTTAAAGAATCATGTGGACAAGAAACAATACATATGTGACCACTGTAACAAGGGTTTTACTTCTAAATGGTATTTAAAGACACATTTAAAGAATCATGTAGACAAGGAACGATACATATGTGACCACTGTAACAAAGGTTTTACTTCTAAATGGTATTTAAAGACACATTTAAAGAATCATGTGGACTAG
Protein Sequence
MDNFTKLMLAQAMTVKVEASALVISPVDLHTNVHIKQEPVGAAEEEQRNMEEEDLYADHEIKEELAIGPVVLQPTDLAQARYMQNTPDGLKVDTRPYKCDTNTKCYTGKYHLKLHKITRTREKTNQNLSTQTGKKRHKCDICNKCFATKYCVKQHIMVHTGEKPYKCDHCNKVFVYKCNLNTHLKIHMRETPYKCDHCNKVFAYKCNLNTHLKTHMREKPYKCVYCNKSYASKYNLNRHLIVHTRDKPYECDICSKHFATKYTLKCHIMAHTGKKPHKCHHCNKVFAYKCNLSAHLKIHTGKKPYNCDHCNRDFACKQYLKTHLKIHVEKVPYKRDHCSKGFACKRYLKTHLKIHVDEEKIHVAEESYKCDYCNKSYAYKYNLNRHLIVHTRDKPYECDICSNHFATKYTLKCHIMAHTGKKPHKCYHCNKTFAYKCHLSRHLKMHTGKKCKCDHCNKGFPSKHYLNTHLLIYMGKKPYKCDQCNKGFTSKWYLKTHLKNHVDKKQYICDHCNKGFTSKWYLKTHLKNHVDKERYICDHCNKGFTSKWYLKTHLKNHVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-