Hkah002949.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:17338358-17350168[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0033 0.15 12.2 1.0 3 23 211 232 210 232 0.96 2 23 0.032 1.4 9.1 0.6 1 22 606 627 606 627 0.95 3 23 4.6 2e+02 2.3 0.3 1 22 666 687 666 689 0.82 4 23 0.0063 0.28 11.3 1.2 2 21 699 718 698 719 0.94 5 23 0.61 27 5.0 0.1 3 23 728 749 726 749 0.89 6 23 0.0041 0.18 11.9 1.5 3 23 769 790 767 790 0.94 7 23 0.52 23 5.3 1.8 1 23 796 819 796 819 0.95 8 23 0.086 3.8 7.7 0.0 1 23 845 868 845 868 0.90 9 23 0.013 0.57 10.3 3.4 1 23 873 895 873 895 0.97 10 23 0.054 2.4 8.4 0.1 1 23 901 924 901 924 0.95 11 23 0.00071 0.032 14.3 1.3 1 23 937 959 937 959 0.98 12 23 0.00012 0.0054 16.7 1.8 1 23 1007 1030 1007 1030 0.97 13 23 0.00024 0.011 15.8 3.0 1 23 1089 1112 1089 1112 0.96 14 23 0.00076 0.033 14.2 2.1 2 23 1137 1159 1136 1159 0.95 15 23 0.06 2.6 8.2 0.1 2 23 1165 1187 1164 1187 0.93 16 23 0.0068 0.3 11.2 0.2 1 21 1231 1251 1231 1252 0.95 17 23 0.00084 0.037 14.1 0.6 1 23 1261 1283 1261 1283 0.93 18 23 7.7e-05 0.0034 17.3 0.3 2 23 1376 1398 1376 1398 0.93 19 23 2.3e-07 1e-05 25.3 1.4 3 23 1405 1425 1404 1425 0.98 20 23 0.011 0.5 10.5 0.1 3 23 1446 1466 1444 1467 0.94 21 23 0.13 5.6 7.2 0.0 1 23 1491 1513 1491 1513 0.97 22 23 0.014 0.63 10.2 0.5 1 23 1519 1542 1519 1542 0.95 23 23 0.00013 0.0058 16.6 0.4 1 23 1551 1574 1551 1574 0.97
Sequence Information
- Coding Sequence
- aTGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACACGGAGCCTCCCATCCTAGCTTCGAAAATCAAGGATTGTGTGTCTGTACAAATAAATGAAAATGACGAACTACCAACTAATGTCTGCAGAAAGTGCATGGACAATGTCAACAATTGGCACATATTTAAGTCAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGTTTAATAAGGATGGCAGCCAACTAGAAGAGGTGCATGTTAAAAGTGAACCTTTCTCTGATGAAGCCTATGATGATGGAGTGGTCATTGATGGGTCATACCCTGAAGCAGAGAATGCTGCCACTTCAAGTAAAGTACAGCCAGAAGGCCCACCAATCTTGGCTTCATTGGGGCTCACACCGAGGAGTGATAAGGGCGCGGAGAGTGAGAAAGATGAAGACGATGAggaagatgaagaagaagaggaaATGAACGAGCCTGCTCAAATCTTCGCGAAGGTTCCCAACATGCCTGAAGTTTCCATCACCGTGATGCGGCCTACGGGAGAAACCCTGCAGTCTCGACAAGGCATCCAGCAGCTAGCATCCAAAGATTGTTTGGTTTGTGGACGCTCCTATAGATATTCCCATAATGCTAGACGGCACGAGCTAACTGCTCATAGCTTTGACAGATACACCAACAAAGTAACAACGAACAAAAAGTCCCATTCGCAAATGCAACCAAAACTGAGACCTAACCCTTTCAATCCTAAAGCTCGGTTGATGCCAAACCCCATCAGTCACAAAATGCAACTTATTCCAAAAGGCATATCTGCTAAAATTATGCCTCAAAAAATTGTAGCGCCACCAAAACCTATACCTATAAAGCCATCAAAGGGACCGCAGAACAATCTGCCTTATCCACTTCGCATTAAGGCTCTTAAAGATCtacaaattaagaaaaaagagccacaaattttgaaaactttgcTAACTACAAAACCTGAAGTCTTAGTATCTGAACCTGAAATTTTGAACTCTGCTCCAGAAAGCCCAGAAACTTTGATTTCTGAACCAGAGATAGCTTCATTCCAAGTTGAAACTATACTGTCTGAACCAGATGGATACGATCAGAACAATGGAGATGAGATGGACGGAGAAGACCTTGACAATCAAAATCCAGCTTATGACACAGTAGATATGGAGTCTGACAATGAAATAGAGATTGCTCAACAAAAGGACGACGTTCATCAATATGCTAATGATCATGATATGGAAGAAGAAAACGCTGATAACGATGGTGAGAATAACGTTGACGACAGTCATGAAAATCCGCAAGACGATGACAAGGAAGGTCAAGTTGACGGTGTTGAAGCTAAAACTGAAGAAGATAACAAAGTTGACGAATATGCCAATGAAGGTGACCACGACAGTCATGAGAATCAAGAAGAAAATGAGGATGAAGGAGACGAAGAGCTACCGCCAATGGAAATAGCGCCTGTGGTCGAAATTAATGAAGATATGCACAACACCAATTCATACAACAGCGAGCCGAATGAAGAGGAGGAAGAAGAACTTGAAGATACAGCAGACAATAACGATACTGTAGATAGTGTAGAACAAAAGGAACTCGATCCTAACAAGCTGTATGTAACGAAAACCCAAAGagatttcatattaaaatataGGGACATAATTGAACagataaatacaaaatgttgtttgtgTTGCAAGAGAGAACATCCTCGCAGAAAAGCCGTAATTCAGCACTTGCAAAAGAATGGACATAAAGTACCCAAACACACTTGTTACAACTGTGTTGTAACTTTCACTCATATTGGGGCTCTACTTAGCCACATGAGATCCAATACTTGCACAGATTTGTGGAAAATCATTTATAACGAAGGAGGCATTACTGATGACGTGGTAATTGATGATCCCAAAAAAGTTCAGTACAAAGATATATTCAATGCCAGATCTTATGCTTGTAAGCTGTGTCCAGCTAAGTTTCAATTGAAACAGTTTATAATGAAACATGTATTGGATGTTCATGAAGATGGCCAGTCTATGGTGCCTCTTTCATGTGTGCATTGTGGAAGTAGATTCAAAGACAGACAGACGTGGAAGAAACACATACGTAATGGCGAATGCACGGTGTATATCGCTTGTGATCTTTGCTCTGAAAAGTTCATTAATATGCAAGATTTTAATGATCATGCTTTGGCTACTCATGCCGGAAGCTTTGAAGCAAACAATCAAAGTAAGTGCGTTGACGGACGACCAACAGATTGCCCATTATGTGACAAGAAACTTAACTCATATCAACACCTGATAAAACATTTGAAGTTCGCTCATAATGAAGATAAACCTCACTTTTGTAGGCATTGTGATGCAAAGTTCGAAGCTACGGCAGATCTTGACCAGCACATTTACACTGAGCATTCTGATAAATCTCTGGGTAACCGGAGTATGGAGCCCGACATGTCACTGGTGAAAGAGGAAGCAGAAGAATATCATTACTCATGCACTGAATGTAATGCCATTTTTGAAACTGTTGACGCTTGGACTGATCACCAAGTAGCTGAACATAATCAAGTAGCACATCATTGCGACCAGTGCGAAAAGAAGTTCTTGAGACCATCTGAACTTGCTGAACATAAAAATACACATCTTCGTGTCAAGTTTTATCCATGCAGTGTCTGTGCTAATTCTTACAGTACACCACAAAAATTGTCAGACCATGTGCAACAAGCACATCCTGGCGCAGGAGCTTATACGCCTGCCGAATCTGAATTTTATTGTGACATTTGCATCAGGTCATTCAAGAGTCGCCAAGCATATTCCAACCACATGCGTATTCATGCCAAAGTACCCACCACCAACAGAAAGCCGGGAGAGCCAAAAAGTTTCGCTCCTCAAATTATTGGAAAGCCAATCAAACAGTTTAATATTGCACAGCAAGGTGTTGTTTTCAAGCCAAATTGTAATGTTCCTAATGCTCCGTACTCATGTGATATTTGCGGTAAAGGGTTCATGCATAAGAAGAACATATGGAAGCACAAAAAGGTGCTACATGCTGATCTTCTTAACGACCGGAATGACAGCGAGGACAATACCATGCACGCTTCAACCGAGGAAGATGAATATACTATTGATGAGAATGGTACTGGACTATCGACCCCTCAGTTTAATAGCTTCAATTTCACCCACTTTGCCAACAGTGCGCAACAGCAATCTCAGGCAGAAGTATACACTTGCGACATTTGCTATCAGCGATTTTCATTTAGAGACAGCTTGAGAAAGCATAAGCGTGCCAAACATGGTAGCGTAAATCCCATTGCGGGTAGTAGCTCTGAAACTCAATCAACACCTGTTAGCGAAGGCTCCAGGTCCAGTTGCACAATCTGTAAGATTACTTTTTCAGACAAAAAGTCGTATTATCGTCATAGGAAGAATGTGCATAAAACCTCGACACAGATGTGTAAAATATGCGGCAAACCATTGAACTCTACGTTAGAGTTGTATGAACATCTGAAAGCTGCTCACGCGAGAGAGTTACTAGGCTATAACGCTAACCAAGGTTCCAGTAAGTCTCAAGACATGACACAAGAATTAGAAATTGAATATGATGGCGATCAGGATACTGTGGACCCCAACGTGGACTACCAAGCGCGTTACCCGTGTGACACTTGCGGCAAACAGTTCGTTGGATTACTGGCTTTACAAAATCACCAATGTATAAGTCCACCCACCCAGCCGCAAACGTTTGATTGCGAAATTTGCCACAAGAGCTATACATCTATTGCTGCGCTAAAGAGTCACCGCGGTTGGCACTTACGATCGCCAGACGGTAAAGCGGCTGCCAATAATTCCGGACTATGGATGCCCCAGCACAAAGTGACAAGTAAGGTCAGTAAACATGAGGTAGTTGACCAAGCTAAACTGCCCCGTATGACTCAATCTGCTCCAGCTACGAGCGTTATTGCCAAGAGGAGATTGCCTCCAGAAGTTGAAGTTACTGTCGTAAATCCGAACAAAAAGATGCGTTCTGACGATTCGGTTGAGATGGATCAACATAATAATACGTCGTCAAGTGGCGTGGACGATAGATATTGTACGATTTGTGATAAGGAGTTCACTAAACGAGCTGCTTATCAGCGCCATATGGATGAGGTGCATCAGCCTAATTCCGTATTTTGCCCAGTTTGTGACAAAAGTTTTACACGTAAATCAACTTTACTCGTGCACATGAAAAAACATTACGAGGGTGGCGAAGGAAGCTCATCTACAGTCGGCCAAGCAGATGATGAGGCTCTTGCTTGTGACCTCTGTGGAGCTCAGTACGACAATGCACAAGCTTTGAGAGCTCACCGTATAAGGCACCACGGAGAGGAGGAGTCTGATCACGACTCTGAGGAAGATGGCAGTGGCGGCAATGCCACCCAGCCGGGAGAATTCACTTGCGCCCAGTGCGGTGACGGCGTAGCCACTCCTCGTGATTTGATCGCCCACCGCACAATGCATGCTACTCCCACCAAGTATTTCTGTAACATTTGCAAAGTCTACTTCGCGAGAGCTCTAGATTTGTCTTCCCACACAAGAGCAAGGCATAGTGAGGGCGAAAAGAGTGCCACTTACCCTTGTGCGATGTGCGACCGATTCTATATGAATAAGAAGAGTTTGCAGCGGCACATTGAAATGGCTCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDTEPPILASKIKDCVSVQINENDELPTNVCRKCMDNVNNWHIFKSVCERTQNKLQSLFNKDGSQLEEVHVKSEPFSDEAYDDGVVIDGSYPEAENAATSSKVQPEGPPILASLGLTPRSDKGAESEKDEDDEEDEEEEEMNEPAQIFAKVPNMPEVSITVMRPTGETLQSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKVTTNKKSHSQMQPKLRPNPFNPKARLMPNPISHKMQLIPKGISAKIMPQKIVAPPKPIPIKPSKGPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSAPESPETLISEPEIASFQVETILSEPDGYDQNNGDEMDGEDLDNQNPAYDTVDMESDNEIEIAQQKDDVHQYANDHDMEEENADNDGENNVDDSHENPQDDDKEGQVDGVEAKTEEDNKVDEYANEGDHDSHENQEENEDEGDEELPPMEIAPVVEINEDMHNTNSYNSEPNEEEEEELEDTADNNDTVDSVEQKELDPNKLYVTKTQRDFILKYRDIIEQINTKCCLCCKREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNEGGITDDVVIDDPKKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSMVPLSCVHCGSRFKDRQTWKKHIRNGECTVYIACDLCSEKFINMQDFNDHALATHAGSFEANNQSKCVDGRPTDCPLCDKKLNSYQHLIKHLKFAHNEDKPHFCRHCDAKFEATADLDQHIYTEHSDKSLGNRSMEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCANSYSTPQKLSDHVQQAHPGAGAYTPAESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKSFAPQIIGKPIKQFNIAQQGVVFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEDNTMHASTEEDEYTIDENGTGLSTPQFNSFNFTHFANSAQQQSQAEVYTCDICYQRFSFRDSLRKHKRAKHGSVNPIAGSSSETQSTPVSEGSRSSCTICKITFSDKKSYYRHRKNVHKTSTQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSQDMTQELEIEYDGDQDTVDPNVDYQARYPCDTCGKQFVGLLALQNHQCISPPTQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDQAKLPRMTQSAPATSVIAKRRLPPEVEVTVVNPNKKMRSDDSVEMDQHNNTSSSGVDDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSTVGQADDEALACDLCGAQYDNAQALRAHRIRHHGEEESDHDSEEDGSGGNATQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKYFCNICKVYFARALDLSSHTRARHSEGEKSATYPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -