Basic Information

Insect: Hyposmocoma kahamanoa
Gene Symbol: -
Assembly: GCA_003589595.1
Location: NW:117700-120459[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.5e-05 0.0016 18.4 4.4 1 23 94 116 94 116 0.97

2 15 3.5e-06 0.00016 21.5 6.5 1 23 122 144 122 144 0.99

3 15 0.00031 0.014 15.4 7.5 1 23 150 172 150 172 0.98

4 15 2.1e-05 0.00092 19.1 1.2 1 23 178 200 178 200 0.98

5 15 4e-06 0.00018 21.4 3.2 1 23 206 228 206 228 0.99

6 15 1.1e-05 0.0005 20.0 1.5 1 23 234 256 234 256 0.98

7 15 1.9e-06 8.6e-05 22.4 2.4 1 23 262 284 262 284 0.98

8 15 0.00017 0.0075 16.3 9.1 1 23 314 336 314 336 0.99

9 15 4.7e-05 0.0021 18.0 6.6 1 23 342 364 342 364 0.98

10 15 0.0074 0.33 11.1 8.3 1 23 370 392 370 392 0.96

11 15 3e-06 0.00013 21.8 3.6 1 23 398 420 398 420 0.99

12 15 0.00091 0.04 13.9 10.6 1 23 426 448 426 448 0.98

13 15 1.6e-06 7.1e-05 22.6 4.2 1 23 454 476 454 476 0.99

14 15 3e-05 0.0014 18.6 10.4 1 23 482 504 482 504 0.99

15 15 4e-05 0.0018 18.2 8.6 1 23 510 532 510 532 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.5e-05	0.0016	18.4	4.4	1	23	94	116	94	116	0.97
2	15	3.5e-06	0.00016	21.5	6.5	1	23	122	144	122	144	0.99
3	15	0.00031	0.014	15.4	7.5	1	23	150	172	150	172	0.98
4	15	2.1e-05	0.00092	19.1	1.2	1	23	178	200	178	200	0.98
5	15	4e-06	0.00018	21.4	3.2	1	23	206	228	206	228	0.99
6	15	1.1e-05	0.0005	20.0	1.5	1	23	234	256	234	256	0.98
7	15	1.9e-06	8.6e-05	22.4	2.4	1	23	262	284	262	284	0.98
8	15	0.00017	0.0075	16.3	9.1	1	23	314	336	314	336	0.99
9	15	4.7e-05	0.0021	18.0	6.6	1	23	342	364	342	364	0.98
10	15	0.0074	0.33	11.1	8.3	1	23	370	392	370	392	0.96
11	15	3e-06	0.00013	21.8	3.6	1	23	398	420	398	420	0.99
12	15	0.00091	0.04	13.9	10.6	1	23	426	448	426	448	0.98
13	15	1.6e-06	7.1e-05	22.6	4.2	1	23	454	476	454	476	0.99
14	15	3e-05	0.0014	18.6	10.4	1	23	482	504	482	504	0.99
15	15	4e-05	0.0018	18.2	8.6	1	23	510	532	510	532	0.98

Sequence Information

Coding Sequence: ATGTCGTACACGGACCTAAGAGATGTTATGAACGTTAAGGAGGAGGCAAGCGAATTGGAAAACAGCTCCATGGATTTACATATGAATTTTTACATCAAAGAAGAGCCAGTTGGCGTTGCGGAAGAAGAACAAAGCAAAAAAGAGGAGCTGGATCTGTATGCAGATCATGAAATCAAGGACGAGTTGGTCATAGGACCTACTTTATTACAGCCTACTGATTTAGCGCAAACAAAATTTGTGCAGAAAACATCTGAGGGATTGAATATCAATACTCGCTCATATAAGTgtgatatttgcaataaatgttaTACAAGAGAACGGACACTTAAAACTCATAAAATGGCCCATTCTGGAGAAGAACCATTCAAATGTGATCACTGTAACAAAGGTTTTGCCTATAAATCACATTTTGTTAAACATATAAAGACTCATAATCGAGAAAAACCATACAAGTGTGatttatgttataaatgttTTACCACAAGAAAGTACCTTAAAGTTCATAAATTTACCCATACTGGTGAAgaaccatacaaatgtgatcCCTGTAACAAAGTTTTTGCCTATAAATCAAATTTTGTTCAACATTTAAAGAGTCATACTGGAGaaaaaccatacaaatgtgatacATGCAGTAAATGTTTTACAACAAGATGGACACTTACATTGCATATAATGATCCATACTGAGGaaaaaccatacaaatgtgatccctgtaacaaagtttttgcctataaatcaaattttgttaaacatttaaaGAGTCATACTGGAGAAGAACCATACATATGTGATCATTGTAACAAATGTTTTGCCAGTAAATCAGATATTAGTGCACATATAAGGATTCATACTGGACAAAAACCATACAAGTGTGTTACtttcaataaatgttttacaagAATAAGACAACCTACGATCCATACTGAGgagaaaccatacaaatgtgaccACTGTGACAAATGTTTTGCCTGTAAGTCAAATTATATTCAGCATTTAAGAACTCATACTGGAGAAAAACCATACAAGTGTGATacatgcaataaatgttttacaagaaaacggaacctgaaatttcatattatgaGCCATACTGAGGAAAAACCGTACAAATGTGGTCActgtaacaaattttttaaacatcaatCAAATTGTATTCAGCATGCAAAGGCTCATGCTGGAGAAAAACCATACAAGTGTGGTacatgcaataaatgttttgtaacaaaatggACACTTCAATATCATATTATGACCCATACTAAAGAAAAACCTTACAAATGTAATCACTGTAACAAATGTTTTAGATATCAATCAAATTGTAATACGCATATAAAGGCTCATGCTGGGGGAAAACCATACAAGTGTGATacatgcaataaatgttttacaacAAGACAGTCACTTAAATTGCATATAATGATCCATAATAACGAAAAGCCCTATAAATGTGATCACTGTAGCAAATGTTTTGTTCGTAAAGATTATCTATGTTATCATTTAAGGACTCATACTAATCCAAAACGACACAAATGTCATATTTGCAAGAAATGTTTTGCAACAAAACAAGCACTTAAAAATCATACAAAGGTGCATACTGGTGAGAAAccgtaa
Protein Sequence: MSYTDLRDVMNVKEEASELENSSMDLHMNFYIKEEPVGVAEEEQSKKEELDLYADHEIKDELVIGPTLLQPTDLAQTKFVQKTSEGLNINTRSYKCDICNKCYTRERTLKTHKMAHSGEEPFKCDHCNKGFAYKSHFVKHIKTHNREKPYKCDLCYKCFTTRKYLKVHKFTHTGEEPYKCDPCNKVFAYKSNFVQHLKSHTGEKPYKCDTCSKCFTTRWTLTLHIMIHTEEKPYKCDPCNKVFAYKSNFVKHLKSHTGEEPYICDHCNKCFASKSDISAHIRIHTGQKPYKCVTFNKCFTRIRQPTIHTEEKPYKCDHCDKCFACKSNYIQHLRTHTGEKPYKCDTCNKCFTRKRNLKFHIMSHTEEKPYKCGHCNKFFKHQSNCIQHAKAHAGEKPYKCGTCNKCFVTKWTLQYHIMTHTKEKPYKCNHCNKCFRYQSNCNTHIKAHAGGKPYKCDTCNKCFTTRQSLKLHIMIHNNEKPYKCDHCSKCFVRKDYLCYHLRTHTNPKRHKCHICKKCFATKQALKNHTKVHTGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -