Basic Information

Insect: Hyposmocoma kahamanoa
Gene Symbol: -
Assembly: GCA_003589595.1
Location: NW:98866-102021[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.3 1.5e+02 2.7 0.1 2 13 90 101 89 104 0.84

2 17 0.32 14 6.0 5.5 1 23 117 137 117 137 0.94

3 17 1.5e-07 6.7e-06 25.8 7.0 1 23 143 165 143 165 0.98

4 17 9.1e-07 4e-05 23.4 2.2 1 23 171 193 171 193 0.99

5 17 1.1e-06 5e-05 23.1 5.9 1 23 199 221 199 221 0.99

6 17 3e-06 0.00013 21.7 3.3 1 23 227 249 227 249 0.98

7 17 2.3e-05 0.001 18.9 5.4 1 23 255 277 255 277 0.99

8 17 5.9e-07 2.6e-05 24.0 4.7 1 23 283 305 283 305 0.98

9 17 4.7e-08 2.1e-06 27.4 2.5 1 23 311 333 311 333 0.98

10 17 1.2e-05 0.00055 19.8 7.5 1 23 339 361 339 361 0.99

11 17 7.7e-08 3.4e-06 26.8 6.2 1 23 367 389 367 389 0.98

12 17 7.8e-06 0.00035 20.5 6.1 1 23 395 417 395 417 0.99

13 17 4.2e-08 1.9e-06 27.6 2.5 1 23 423 445 423 445 0.98

14 17 2.7e-07 1.2e-05 25.1 10.7 1 23 451 473 451 473 0.99

15 17 3.6e-06 0.00016 21.5 5.5 1 21 479 499 479 500 0.95

16 17 2.1e-07 9.3e-06 25.4 2.9 1 21 507 527 507 528 0.95

17 17 0.0039 0.17 12.0 1.6 5 23 539 557 534 557 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.3	1.5e+02	2.7	0.1	2	13	90	101	89	104	0.84
2	17	0.32	14	6.0	5.5	1	23	117	137	117	137	0.94
3	17	1.5e-07	6.7e-06	25.8	7.0	1	23	143	165	143	165	0.98
4	17	9.1e-07	4e-05	23.4	2.2	1	23	171	193	171	193	0.99
5	17	1.1e-06	5e-05	23.1	5.9	1	23	199	221	199	221	0.99
6	17	3e-06	0.00013	21.7	3.3	1	23	227	249	227	249	0.98
7	17	2.3e-05	0.001	18.9	5.4	1	23	255	277	255	277	0.99
8	17	5.9e-07	2.6e-05	24.0	4.7	1	23	283	305	283	305	0.98
9	17	4.7e-08	2.1e-06	27.4	2.5	1	23	311	333	311	333	0.98
10	17	1.2e-05	0.00055	19.8	7.5	1	23	339	361	339	361	0.99
11	17	7.7e-08	3.4e-06	26.8	6.2	1	23	367	389	367	389	0.98
12	17	7.8e-06	0.00035	20.5	6.1	1	23	395	417	395	417	0.99
13	17	4.2e-08	1.9e-06	27.6	2.5	1	23	423	445	423	445	0.98
14	17	2.7e-07	1.2e-05	25.1	10.7	1	23	451	473	451	473	0.99
15	17	3.6e-06	0.00016	21.5	5.5	1	21	479	499	479	500	0.95
16	17	2.1e-07	9.3e-06	25.4	2.9	1	21	507	527	507	528	0.95
17	17	0.0039	0.17	12.0	1.6	5	23	539	557	534	557	0.95

Sequence Information

Coding Sequence: ATGGATGTACAAGATATTATGAACGTTAAAAAGGAGACAAGCGAATTAGAAAACAGCACAATGGGTTTACATGTAAATGTCAACATTAAACAAGAGCCAGTTAGTGTTTCTGAAGAACATACCCCAGAAACGATGAAGCTGTATGCAGATCATGAAATCAAGGAAGAAATTGTCATAGGTCCGGTGATGTTACAGCTTCCAACTGTAAATGATTCAAGATGTGCGCAGAGCACATCTGATAATCTGAATATTCATACTCAACCTAACAAATGTAATATTTGCAATTTAGATTTTATGAGCAGCCATGTATACATGTGTCGTAAAGTAACTTGTACTGGAGAGAAACCATTTAAGTGTGAACACTGTAACAAAACCCAAAAATCAAATCTTAAAGTACATTTTATAACCCATACTACAGAGAACCCCTACAAATGTGAACATTGTAACAAATGTTTTACCCGAAAATCAAGTcttaatagacatttattgATCCATACAGGAgagaaaccatacaaatgtgaatATTGTAACAAATCTTTTACCCAAAAACAAGTTCTTAAGACACATTTAATGATCCATACAGGAgagaaaccatacaaatgtgaacATTGTAACAAATGTTTTACCCGAAAACCATACCTTATTAAACATTTAATGATCCATGCCGAAGAGAAACCATACCAGTGTGAACATTGTAACAAATCTTTTACCCAAAAACAAGTTCTTAAGACACATTTACTGATCCATACAGCAgagaaaccatacaaatgtgaacATTGTAACAATTGTTTTACCCGAAAACCATATCTTATTAAACATTTAATGATCCATGCAAAAGAGAAACCATACCAGTGTGAACATTGTGACAAATGTTTTACCCGAAAACCATAtcttattaaacatttattgatCCATGCAGAAAAGAAACCATACCAGTGTGAACATTGTAACAAATCTTTTACCCAAAAATCTGATCTTAACAGTCATTTAATTATCCATACAGGAgagaaaccatacaaatgtgaacATTGTAACAAATGTTTTACCCAAAAACAAGTTCTCAAGACACATTTAATGACCCATACAGAAGAGAAACCATACCAGTGTGAACATTGTAACAAATGTTTTACCCGGAAATCAGATCTTAAGAGACATTTAATAATCCATATAGGATggaaaccatacaaatgtgaacATTGTAACAAATGTTTTACCCAGAAACAAGTTCTTAAGACACATATAATGATACATACAGAAGAGAAACCATACCAGTGTGAACATTGTAACAAACCTTTTAACCGGAAATCAGATCTTAAGAGAcatttaataatacatacagGATggaaaccatacaaatgtgaacATTGTAACAAATGTTTTACACGAAAATCACATCTTAACAAACATTTAATGACCCATACAGGAgagaaaccatacaaatgtgaacATTGTTACAAATGTTTTACCCAAAAATCAAGTCTTAAGAGACATTTAATAAGCTGTATAGGAGGGAAACCATACCAGTGTGAACATTGTAACAAATCTTTTTTCCGAAAATCAAATCTTAAGAGACATTTAATAAGCTGTACAGGAGGGAAACCATATAAATATGAACATTGTAACAAATCTTTTTTCCgaaaattagattttaaaaaacatttaataaaccaTACTGGAAAGAAACCATAG
Protein Sequence: MDVQDIMNVKKETSELENSTMGLHVNVNIKQEPVSVSEEHTPETMKLYADHEIKEEIVIGPVMLQLPTVNDSRCAQSTSDNLNIHTQPNKCNICNLDFMSSHVYMCRKVTCTGEKPFKCEHCNKTQKSNLKVHFITHTTENPYKCEHCNKCFTRKSSLNRHLLIHTGEKPYKCEYCNKSFTQKQVLKTHLMIHTGEKPYKCEHCNKCFTRKPYLIKHLMIHAEEKPYQCEHCNKSFTQKQVLKTHLLIHTAEKPYKCEHCNNCFTRKPYLIKHLMIHAKEKPYQCEHCDKCFTRKPYLIKHLLIHAEKKPYQCEHCNKSFTQKSDLNSHLIIHTGEKPYKCEHCNKCFTQKQVLKTHLMTHTEEKPYQCEHCNKCFTRKSDLKRHLIIHIGWKPYKCEHCNKCFTQKQVLKTHIMIHTEEKPYQCEHCNKPFNRKSDLKRHLIIHTGWKPYKCEHCNKCFTRKSHLNKHLMTHTGEKPYKCEHCYKCFTQKSSLKRHLISCIGGKPYQCEHCNKSFFRKSNLKRHLISCTGGKPYKYEHCNKSFFRKLDFKKHLINHTGKKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -