Hkah008183.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:5087791-5090298[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-08 7e-05 22.0 0.0 2 37 19 54 18 61 0.88 2 2 1.7 1.2e+03 -1.2 0.1 13 23 139 150 137 152 0.72
Sequence Information
- Coding Sequence
- ATGCCGCGAAAATATAAAAGGAAAATAGGGGCACCCGTTCGTGCTGCTTGGTCTGAAGAAGCCCTTTGCAAAGCTTTTGAGGAAATGGATAAAGGCCAAGTCGGTGTAAATGAAATATCTCGTCGTTATGGTATTCCATCTCGAACTTTGAGGAGGCGATATGCTAAAAAAAGCTGTAAAAAACTTACTTTGGGAAAACATCCCACACTGGACTTTGACAACGAGATACGTCTCGTAGCCcacatacaaaaattagaaAAGGCAGGATTTCCCACAACACGACAGGATGTAAGAAGACTCGCTTTTGAATTTGCCGAGAAACTGAGTTTGGAAAATTCTTTTAACAAAGAGACACGTATGGCTGGTCAGCACTGGCTCAAATCATTTCTTGAACGACACCCAGAACTCAGTGTTCGCCAGGCAGAAGGTTTGTCTATTGCAAGGGCTCAAGGATTAAATCGAGATGAAGTAAACAAAATGTTTGAATTGTTGCTAAAAGTACTAACTGAAAATGATTTGATCGATAAACCTGATCGAATTTATAATACTGACGAAACTGGAGTTCAAATGAACAATAATCCTGGTAAAGTTATTGCTACTAAAGGTGCCAAAGTAGTAAATTCCGTCACTTCTAGCGAAAAAGGTGAGACAATGTCAATTATAGCTTGCTGTAACGCTGTTGGCCACTATGTTCCTCCGGTGGTCATTATCAAGGGGGTCAATAAAAGACCAGAGTTTCAAGAGGGTCTTCCGCCCGGAGCCAACGTGTACATGAACAAAAAATCTGCCTACGTCAACTCAGAACTCTTTCAAAAGTGGCTGAAAGAACAGTTCGTGCCAATAAAACCACAGGGTAAGGTTTTGCTTATACTTGATGGGCATTCATCTCACACTACTGCTATTGATTTACTAGAATTAGCACAAGAAAATGATATCATATTGTTCTGTTTGCCAAGCCACACTACACAGGCTTTACAACCGCTTGACCGGAGTTTTTTTAAACCTTTCAAAACTTACTTTGCTTCAGAAACTAAAAACTGGATGTTCAGTCACAAAGAAcgaaaaataaatcgatacattGCTGGAAAATTAATAGGTAACGCATGGACTCGCGCTGCTACCTCTTCTAATGCTGTGAATGGGTTTCGTGCATGTGGTATTTTCCCGTACAATCCTTCTGCTATTCCTGACAGCTACTTTGCTATCTCTGATAACAGCTTTCAAAATCTAGATGAAGGAAACCTTGCTCAAGACCAACCAGTAGCAAGAGAACTCGACGCTAATGCTGATGTGACTTCATATTATGTTGAGCCTCAGCCTGGTCCAACGTCATCAACTGTCAATAGTGAGCGGGAGCCTGATTTCGGGTTCTTACTATATGAAGATCTTGCAGCGGACGCAATTATTATTCCCATGGAAGGAAATGCCAGTCCGTCCATCCTTTCTCCGAATCATAATGTTGAAACTGTAGAAGTCATAACTCCAGGTGAATATTATCTTAAAGAATGTTCACCGGTCccaaaaattcaaaatctagATGAAGGCAACCTTGCTCAAGACCAACCAGTGGCAAAGGAACTCGACGCTAATGCTGATGTGAATTCATATTATGTTGAGCCCCAGCCTGGTCCATCGTCGTCAACTATTAATAGGGAGCCTGAAACTGTAGAAGTCATAACTCCAAGTAAATATCTTAACGAATGTTCACCTATCCCGAAAATTCCTGTTCCATTATATAAAAGAGGCAAGCAAGGTGCTGCCGTTTTAAATTCAGAAGAACATATTAACTCTAAGAAAGCTAAGTTGAAAGGTAAAGCTAAGAAGCAAACACCAGACAAACCTAGAAAAAACAACCAAAAATCAGTTCCTAAAAAGAAAAGACCGAGGTTTAGCTCTGAAAGTGAACAAGAGTTCGATGAATCAGATTCTGACCAGACTGAATCTGATAAAGAAAATACTCAATGCAGAGAATGTTTCGATGACTATGCAAGTACCAAGTCTACGGCGGACTGGATTCAGTGCCTGATGTGTAAACTCTGGTTACACGAAGATTGCACTCTATATGGCGATTACTGTAATAGATGTGGACACAAGAAGAAGAAGCTTGCAGCTCTAAAAGCTAACCTGGCCAAAGTGAATTCAAAGAATAAGTAA
- Protein Sequence
- MPRKYKRKIGAPVRAAWSEEALCKAFEEMDKGQVGVNEISRRYGIPSRTLRRRYAKKSCKKLTLGKHPTLDFDNEIRLVAHIQKLEKAGFPTTRQDVRRLAFEFAEKLSLENSFNKETRMAGQHWLKSFLERHPELSVRQAEGLSIARAQGLNRDEVNKMFELLLKVLTENDLIDKPDRIYNTDETGVQMNNNPGKVIATKGAKVVNSVTSSEKGETMSIIACCNAVGHYVPPVVIIKGVNKRPEFQEGLPPGANVYMNKKSAYVNSELFQKWLKEQFVPIKPQGKVLLILDGHSSHTTAIDLLELAQENDIILFCLPSHTTQALQPLDRSFFKPFKTYFASETKNWMFSHKERKINRYIAGKLIGNAWTRAATSSNAVNGFRACGIFPYNPSAIPDSYFAISDNSFQNLDEGNLAQDQPVARELDANADVTSYYVEPQPGPTSSTVNSEREPDFGFLLYEDLAADAIIIPMEGNASPSILSPNHNVETVEVITPGEYYLKECSPVPKIQNLDEGNLAQDQPVAKELDANADVNSYYVEPQPGPSSSTINREPETVEVITPSKYLNECSPIPKIPVPLYKRGKQGAAVLNSEEHINSKKAKLKGKAKKQTPDKPRKNNQKSVPKKKRPRFSSESEQEFDESDSDQTESDKENTQCRECFDDYASTKSTADWIQCLMCKLWLHEDCTLYGDYCNRCGHKKKKLAALKANLAKVNSKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761618;
- 90% Identity
- iTF_00761618;
- 80% Identity
- -