Hkah008486.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- -
- Assembly
- GCA_003589595.1
- Location
- NW:8929836-8932622[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-09 1.1e-06 27.8 0.0 3 37 17 51 16 57 0.94 2 2 0.37 2.7e+02 1.0 0.0 22 30 142 150 131 151 0.77
Sequence Information
- Coding Sequence
- ATGCCTCGAAAATACCAAAGAAGTACTCTGAGAGCGTCATGGGCGTCGGAAGACCTGGAAAAGGCTATGGAGAAAGTTCGAAATAAAGTAATGGGTGTCAATGAAGCTTCCAGAACTTTCAAAATCCCATCTCGGACACTCAGAAGGCATCTTCTATCTGGAAAATTAAAGGTTCCCCTTGGTCGCAACCCAGTATTTTCCATCGAGCATGAAAAAAAGATAGTTgctcatataaaaaaattagaacaagTTGGATTTGCCCCAGAGAGAAAAGATGTTAAAGAGATGGCATTTCAAATAGCAAagaaacttgaaataaaaaatccattttTAGAAAGTTCGGCATCTGCGGGCAACACCTGGTTTATGGGATTTATGAAACGTAACCCTGAATTAAGTACGAGACAGTCAGAAGGATTATCGCTTGCTCGGGCTTATGGAGTTAATCGAGAGGACGTCAAATACTTTTTCGATTTACTAACCAAACTCTATGAAAAAAATGATTTTGCCAACCACCCTGAAGACATATATAATATGGACGAGTCTGGCATCCAAGTGAACAATAAAGCTGGCAAAGTGGTAGCCACAAAAGGAGCCAGAGACGTTTTCACGCTCACTAGCTGTGAAAAAGGGGAAAATGTCACAGTTATTGCTTGCTGCAATGCCCAAGGAAACTTTATTCCTCCAGTACTGATTTATCGTAGTACAAAATTAATGCCAGTAAGAAAACTGTGA
- Protein Sequence
- MPRKYQRSTLRASWASEDLEKAMEKVRNKVMGVNEASRTFKIPSRTLRRHLLSGKLKVPLGRNPVFSIEHEKKIVAHIKKLEQVGFAPERKDVKEMAFQIAKKLEIKNPFLESSASAGNTWFMGFMKRNPELSTRQSEGLSLARAYGVNREDVKYFFDLLTKLYEKNDFANHPEDIYNMDESGIQVNNKAGKVVATKGARDVFTLTSCEKGENVTVIACCNAQGNFIPPVLIYRSTKLMPVRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827901;
- 90% Identity
- iTF_00827901;
- 80% Identity
- iTF_00827901;