Hpun040155.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438821.1:6087475-6108438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9 2.1e+02 4.1 0.5 6 23 1056 1073 1055 1073 0.96 2 10 0.35 39 6.3 1.9 1 23 1103 1126 1103 1126 0.95 3 10 0.009 0.98 11.4 8.1 1 23 1129 1151 1129 1152 0.95 4 10 0.077 8.4 8.4 2.9 1 23 1155 1178 1155 1178 0.90 5 10 1 1.1e+02 4.9 0.5 3 16 1191 1204 1190 1206 0.88 6 10 0.089 9.7 8.2 0.7 3 22 1228 1247 1227 1251 0.92 7 10 1.4e-05 0.0015 20.2 0.6 2 23 1260 1282 1259 1282 0.94 8 10 0.042 4.6 9.2 1.4 1 23 1288 1311 1288 1311 0.93 9 10 2.9e-05 0.0032 19.2 1.2 2 23 1321 1342 1320 1342 0.97 10 10 0.014 1.5 10.7 2.0 1 23 1348 1371 1348 1371 0.96
Sequence Information
- Coding Sequence
- atgaGAGAAATTAAAGTAGAAAACAATGCAGTGTGCCACGGGTGTTTAAGCAGCAACCGCAAGACTCTGGCTCTAGGTGTGCTTGCTGACCTACTTTTGAACCTCATTGGAGATAAAAACAAGACCATGTTTTGTGCTGTGGAAGATGTAAAATTCTGTTGGGAGTGTATGGCGATTCTTAAGAAATTCAAATCATTTCAAAATCAATGGAGAAATGCCCAAACTGTACTAATGCAAATGCAGGTTCTTTGTGACCAGGATTTGAGTCCGGTGTCACTGTCCAAATTGGGAACCATAGAAAAGCATTACTATGACCATGATTACACATTCCTAAACATTGATGAAACAAAAGATAATGCAAATGTTATAGACAGTAAGGAaactataaaagaagaagactaCAGCGAATTCGACTTAACCGATAACAATTCTGAACAAAACGAAATAACCGATGATAAAACTGAATTCTGCTACGATGTAAATATCATAAAAGACATTGATCAGGATAACATTGtacaaaatgtcataaaaaatgaCAGTGATTCACAAATAAAAGTTAAATCAGAGGAAGATTCCGGGAAAAATAGAAACCTTGACGAAACAAGTGATGAAGACTTTGACATCTATCCAAATGACATTAATGATGAAGTAAAAACAGAACTCGGGCCAAAAAAAGTAAAGAAGCGAAAACCGGGAAGGCCAGAATTGAGTGGCATCAATTTCTATAAACAGTATATGACATTATTGGAAAGGGAGAAGATTGATTGGGGCAAAGTGGATGATTATTTCACCATGATAACATTTGGGGAGGCAGAGATGGAAGAGCATTTTTTACTTAAAGATTTAGTAAGAAGATCAAAGGAGGTTCGACAGTTTTTAAGTAGCGCCTCAAATTTAGACGTCATTCGCAAAGAATATAATGCGGAATTTGACGACCTGCTCATGCTGAAAATGGAGATTGATCCCGACTTGGATCCGGATGTGACTGCACTCGAGTCCTTCGAAAATGCATTCATTGCTGTACAAAGTAGGGTCAATGCCTTTTcagataaaaacaataaaataattaacggTCCTTCGAAATTACCAGCCCAAAAAATGAAATTGCCACCTATTGAACTACCAAAATTCAGCGGCGATTCTAAAGCTTGGCGAATGTTTATTGAATGTTACAATAGCATCATTCATAACAATTCGGAATTAACAAACGCGGAAAAGGTTTATTATCTGTGTGGACAATTGTCCGGTCAAGCACTGCGCTGTGTAGCCGGCATTACGCCCACAgcaaataattatgatctcatttATGAGACCTTGGTCTCTAAGTTCGAGGATGTGCGCTCAATGGCCACAGCATATCTCGACGATAtattaaacgtaaaaaaaatgcaaagtcCTTCCGTTGATGGCTTAAATGCATTCATTGATAAATTCTCAGTGTCGGTGGCTGCTTTCCAAAAATTGGATATCCCCGCGAAATTAGATTTTGTCTTCTTATATTTGGCGCTCAAACGTGTTGATAACGAAACAGCGCGACTATTTGAAAATTCAGTGCGTGAAGAAAAAATCCCATCCTACGCCAGTTTCGCGAAATTCGTTCGTGAACAAGCAAAGATTATTGAACGGACTGGGACTTATACACCAAACGGTAGTGGTAGGATCGCAACGACAACTTATAGGGTACCTGTtccacaaaataaatcaatcgGGGAACGAGCCACTCGCGCTCTAGTGACCCAAAATGCGACTTGTCCCATGTGCCAAGGTGACCATGCCACTTTAACTCGGTGCACTGATTTCTTGAAGCTGTCTGCTAAAGACCGTTTTCAGGCTGTAAAGCAAAACAATGGTTGTGTTTTGTGCTTAAGTCTTCAGCACAAACCAAACGCTTGCAAGGTAAAGGGAAACTGTAACTCTTGCCAGTCTAAATCGCACCACAGCCTACTGCACTTTGGCAATCTTCAGACAAGTACGTCATTGACAGTTACTGATGAAGATGATGGTGTGGAAATGGTCTGTGAAGATTTGCCTGTAGAAGATACGATAGACTCCGAAGTAAACAATGCGGGAGTGTCTCTATGTTCTTCACAGCAAGTAAAGCTGGGTAACTCGGAATGCGAAACAAAACCTAACACGGTCTTGCTGGCTACCGCACGCGTTAGGGTAGTAGATGCATCGGGTAATTCCCATTTGGTTAGATGCCTGATAGACAATGGTTCACAAAACCATTTTATTACGAAGCAATGTTGCGATAGGTTATCGCTTTCTCCTCGCTCGTTTGGGAGTCCGATGACTATTAATGGGTTTGGAGGAGGAGCTAATCCTGTGATTGGTGTGACAGAATTAGAATTCTATTCTCGTTTTGATCGAAGTCGCCCATATCCAGTCCGCCCGTTAGTGGTAGACTCTATCACCGAAAGTCTTCCCACGGCTAAGGTAGACCGGTCGGTATTGCGCCATTTAAAAGGTGCCCCATTGGCGGATAATACCTTTGACTGTCCGGGGGAAATAGACATGCTAATCGGTGCTCAGCTCTTCTCTCGCCTAATTTTATCAAAGCGCATAAATGGTGCTCTGGGGCAGCCAGATGCAATGCAAACCACTCTCGGCTATATTGTAATGGGAACTGCACCTGTACTTAAACCAACAGCCAAAAACAACACTTCAACCTTTTGTGTTTTTACTGGCCCTCAATTAGAGGAAGTAGTTCAGAAGTTTTGTGAACTTGAAGAGGTACCCTCTTGTTCTGCAGCTCAATTAAGTAGCGAAGAGCAAGAATGTGAAAACTTCTATAAATTGACTACTACCAGGGATGAAACTGGTAGGTACAGCGTAGCATTGCCATTCAAGTCGAGTGAAAGCGAACTAATCAGTTCTTTGCCCAACGCAGAAAAACGTCTCTTTTCacttgaaaagaaaatgaacgcCTCTAGCCAACTCCGGGAGGCATATAACGATGTGTTTAAGGATCACTTAGCAAACGACTACATCGTTCCAGTCTCAGAGGACACTGACTTATTATCAGGATATGTCATACCTCATCATGGGGTTATCTGTAATGTTAAGGTCACCACCAAATTGCGAATTGTCTTGGATGCCAGCGCACGTACAGACAAGAATGTCTCGCTCAATCAAATGTTGCATTCAGGCCCGAATTTGCAAGCGTGCCAAAAGAAACTATCTTCCCTAGAAGAGTTGGAGAAGCATTGGCACCAGCACACCCCCATAGCTAAATGCAACCTGTGCGGAGACGTTTGCAGGCCGCTCGGAAAGAAGAAACACCTCAATTATGCCCATACCAAGAAATATGCCTGCCAGTACTGTAAATTGACGTATGGAAAAATGTTTGAGTTCATCAAACACTACAAAGAAACGCACCAAAAGTTCATCTGCGACTACTGCAACAAGTGCTGCAGGACCAAATATTTAGTAGAGCAGCATATTAGCAAGCACCACAACACGTTCACTTGCAACATATGCAACCGGCAGTACAACAACTACCGCGGGTTCAAGCAGCACAACTACGTGTTCCACCCGGACCCGGCCACGGAGCGGCCCGAGCTGGCGTACTGTGTGGAATGCAACAAGCAGTTCTCGAGTTACAACAACTACCGCGGGTTCAAGCAGCACAACCACGTGTTCCACCCGGACCCGGCCACGGAGCGGCCCGAGCTGGCGTACTGCGTGGAATGCAACAAGCAGTTCTCGAGTGTCATCAAGTATAAGGAACATTTGAAAACTTCGCCCAGACACACAGAAATCAAGCGCGTTATgCTACCATGTCCGGATTGCGgcaaaattttcaaaaagaaaaattatctGAACAACCATTACAACCTGTTCCACGCCAAGAAATCTAAACATTATTGTGAACTCTGTGATAAGTACTACGTCAACGGCTACGCATTAAGAACGCACAGAACTAACGTTCATATGAAGGTTATTAAATCCAAGGACAAAATGTGCGATTTGTGCGGCCGGGGGTTTTCTACAAACCGCACATTGGTGAACCACCGCCGGACCCACACGGGCGAGCGGCCCTTCCAGTGCCCTTTCTGTAGCGCTGCGTTCGCGCAGAAGTACGCGATGCAGTCCCACTGCCGCACGCAACACAGGGACGTCAAGTGA
- Protein Sequence
- MREIKVENNAVCHGCLSSNRKTLALGVLADLLLNLIGDKNKTMFCAVEDVKFCWECMAILKKFKSFQNQWRNAQTVLMQMQVLCDQDLSPVSLSKLGTIEKHYYDHDYTFLNIDETKDNANVIDSKETIKEEDYSEFDLTDNNSEQNEITDDKTEFCYDVNIIKDIDQDNIVQNVIKNDSDSQIKVKSEEDSGKNRNLDETSDEDFDIYPNDINDEVKTELGPKKVKKRKPGRPELSGINFYKQYMTLLEREKIDWGKVDDYFTMITFGEAEMEEHFLLKDLVRRSKEVRQFLSSASNLDVIRKEYNAEFDDLLMLKMEIDPDLDPDVTALESFENAFIAVQSRVNAFSDKNNKIINGPSKLPAQKMKLPPIELPKFSGDSKAWRMFIECYNSIIHNNSELTNAEKVYYLCGQLSGQALRCVAGITPTANNYDLIYETLVSKFEDVRSMATAYLDDILNVKKMQSPSVDGLNAFIDKFSVSVAAFQKLDIPAKLDFVFLYLALKRVDNETARLFENSVREEKIPSYASFAKFVREQAKIIERTGTYTPNGSGRIATTTYRVPVPQNKSIGERATRALVTQNATCPMCQGDHATLTRCTDFLKLSAKDRFQAVKQNNGCVLCLSLQHKPNACKVKGNCNSCQSKSHHSLLHFGNLQTSTSLTVTDEDDGVEMVCEDLPVEDTIDSEVNNAGVSLCSSQQVKLGNSECETKPNTVLLATARVRVVDASGNSHLVRCLIDNGSQNHFITKQCCDRLSLSPRSFGSPMTINGFGGGANPVIGVTELEFYSRFDRSRPYPVRPLVVDSITESLPTAKVDRSVLRHLKGAPLADNTFDCPGEIDMLIGAQLFSRLILSKRINGALGQPDAMQTTLGYIVMGTAPVLKPTAKNNTSTFCVFTGPQLEEVVQKFCELEEVPSCSAAQLSSEEQECENFYKLTTTRDETGRYSVALPFKSSESELISSLPNAEKRLFSLEKKMNASSQLREAYNDVFKDHLANDYIVPVSEDTDLLSGYVIPHHGVICNVKVTTKLRIVLDASARTDKNVSLNQMLHSGPNLQACQKKLSSLEELEKHWHQHTPIAKCNLCGDVCRPLGKKKHLNYAHTKKYACQYCKLTYGKMFEFIKHYKETHQKFICDYCNKCCRTKYLVEQHISKHHNTFTCNICNRQYNNYRGFKQHNYVFHPDPATERPELAYCVECNKQFSSYNNYRGFKQHNHVFHPDPATERPELAYCVECNKQFSSVIKYKEHLKTSPRHTEIKRVMLPCPDCGKIFKKKNYLNNHYNLFHAKKSKHYCELCDKYYVNGYALRTHRTNVHMKVIKSKDKMCDLCGRGFSTNRTLVNHRRTHTGERPFQCPFCSAAFAQKYAMQSHCRTQHRDVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -