Hpun027822.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438811.1:2296361-2314907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0079 0.86 11.5 0.6 1 23 294 317 294 317 0.92 2 10 0.042 4.6 9.2 3.7 1 19 329 347 329 351 0.93 3 10 2e-06 0.00022 22.8 0.6 2 23 357 378 356 378 0.97 4 10 0.00033 0.036 15.9 1.4 1 23 382 404 382 404 0.99 5 10 4.5e-05 0.0049 18.6 1.2 2 23 660 681 659 681 0.95 6 10 0.47 51 6.0 0.3 2 23 701 723 700 723 0.87 7 10 1.6e-06 0.00017 23.2 4.1 1 23 729 751 729 751 0.98 8 10 0.00035 0.039 15.8 1.5 1 23 756 778 756 778 0.97 9 10 0.0012 0.14 14.1 2.3 2 23 785 807 784 807 0.96 10 10 0.17 19 7.3 2.5 3 19 847 863 846 868 0.94
Sequence Information
- Coding Sequence
- ATGGAGTCGGTATACTACCAATATGCGAAGATACCCCTCGTGATCTTCCCAAGAGAGTGCCTCTCACTTGAAGTCCGTGAAGAAATGATCTCCCGTGTGGTGATTAAACTATCCATAGTTTCACTAGACCATAAAGGACATTCCGTTTATTCTGGCGATTGCCGCGTGCAGCTTACAGGTTCTGGTGATACCCAATTATCATATCCAGATGATATCGCCGAAGTCGAACAAGAGATCACGACGGATTCGTTGTTAGAATATGATGATATCAGTAAGATGCCCGTCATATTCTCTGATGTTAGTGATTTATCGGACCCACCTTACTACCAGTCCCAGGTGTGGAAAGATCCTTCTGTAAGCCCATATGTCTACAACCACTATGATAGGCCTGTGCAGCAGACATACTCTGTGCTGGATAATTCGGCCAGTATAACCATCCAGCAGCACAACACTTACATTACTAAAAATGTGTACAACTATGACCGGCCTCAAAATTATCTTGAACAAGTTGGGTATAAGCAGATGCGGGAGACTCCCAAACAGCTGCTGTCTCTGGAGACCTTTTCTAACGATGAAGAGTCTGAGAGTGAGATGTTGTTGTCTCAGTTGtctaagaagaaaaaaaaaaataaaggttaTAACGTTGCCAATACCCAGAGGGATAATGAAGCGCTGAAACAGCTGATGGCTACCAACATCAAGTCTTCGAAGCAGCGGAAGACCATACTGTTTCAAGGAGAGAGCTCGGAGACAGGCCAGACTATTCAGAAAATACTGTATACGGATCCGAAAGTCAAGTGTTCTGCCGTCACCATGGATAATGAGCTTCCTACATataTTCCAGAAGAATCATCAGCCTCGACTCCTCGCAAGAAAAAATACCAATGCGACAAATGCAAGACCATTTTCGACCAAATCTCCGTGTTCCGCCAGCACATGGTCGGGAACCATACCAACTATCATGTCGCAGCTAAGTCGAGGCAATACGTCTGCTCGAAATGCGACAGAAAATTCTCAGATCAATTGAAATACAACACGCACTGCGAGGGACACGGGGACCCGGACCTGGAATGCCCCATATGCCACAAAGTCTACGCTTCAAAGAACAACCTGAAAATTCATCTAAAAATCCATAATCGCAAATATCGTTGCACGGATTGCACGAGGTCGTACGACAATGCCGAAGTTTACAAGACTCATCTGAAGACTCATTTGAAATTCGTCTGTCAATTTGAAGACTGCAATTTTACTGCTAATTCTGAATCGAAGCGCGATGATCACTACGATGAACATATTAAGAACCATGTCAATAATGATCCCAGCAATAACGACTACGGCattgaagaccaagatactgaCAGTGCCGATAATAATCATCAAAGCAGCGATCACGCCGATCCCTATAGTAGTGATCAAAACAATCAAACCAGCTCTAGTTTCGAAGAACAACTGAATTTTGTTTACAATGACGATATTGAAGAACAATTTGGTATTGCCGAGACGTCAAGCAACACTGAAATTGGAGAATCGTTGCTGGTCGATTACATAGAGGATTTTCAAGACGATCTGACAATAACAGAATGTGAACTGAAAAGCGAATCGTCCGATTTGCTACTAGGTTCTGATGGTACGGTAAGTAACGATATATCTACTGAAGATAGCAGCAGTAGTAGCAGTAAAGACagtgaaataataatagtgGATGGATTTGAACCAGGAAAAGATTACAACGAGAAAATAGGAAGATATGAAAACGAAGGAGAAGATaattcaaatgaaaaaaatgaaaatgaagaaCCAGacatgaatgaaaaaaatgagaATGAAGAACCAGACATGAATGAAAATGCTACATTAGAGGATATCAATAAAGAAGAAAGGATAAGGACGGCGGATTCGGTGATAGCAAAGGTTGTGTCGGACGAGTTATTCCTGCCGAACACAAGAATGAAGAATAAATATGTGAGGGGCAATAAGACGTGCCTGGTGTGCCACAAGTCGTTCGACCGGGCGGGCGACCTCAAGCGACACCTCATCGAGCACGTCCTCAAGTCCACGCTCACCAAGCTCGACAGAACAGACCAGGGGATACTGCAGATTACTTGTGCGATTTGCCTTAAAGAAACGTTCAGCACGATCGACAAATACAAAGCGCACCTCCGCGAGCACGCCAGACTGACGCTCTACAAGTGCACCTTCTGCGACAAATCCTTCAGCGACTCCAGCAACTTCTCCAAGCACAAGAAAATCCACGGCTTCGCCTACTTCCAATGCGATATGTGCCGCAGGAAATTCAACTCCAAAATAATGCTGTCAAGACACCTCGAACTGCACGAAAAAAGCGAACCGCTCGAGTGCAAACATTGCCAACGTCTCTTCCCTTTCGAATCCATGCTAAAGAAGCATCTAAAAAGCGTTCATTACAAGAATTCTCGATCCAAATTCTCGTGCAGGTTTTGCCCTGTGTCCTGCAAGGCTTTGAAAGACAAGTGGGACCACGAGTGGGAGGTCCATGGCATCAGGAAGATGATCGTCGACTGTCTCGTTTGCGACGCCAAGTTTCGAAAATTCTCCGAATTGAAGCGACACTGTTCGGATGAACATCACATCGACATTCCGACGCAGAAAGAGCTTCTGGCTCGTAAGACGTCTAAGAAAGTCAAAGTCCAGAGAAATGATTCTGAAGATTGTTGCTTAGTGTAA
- Protein Sequence
- MESVYYQYAKIPLVIFPRECLSLEVREEMISRVVIKLSIVSLDHKGHSVYSGDCRVQLTGSGDTQLSYPDDIAEVEQEITTDSLLEYDDISKMPVIFSDVSDLSDPPYYQSQVWKDPSVSPYVYNHYDRPVQQTYSVLDNSASITIQQHNTYITKNVYNYDRPQNYLEQVGYKQMRETPKQLLSLETFSNDEESESEMLLSQLSKKKKKNKGYNVANTQRDNEALKQLMATNIKSSKQRKTILFQGESSETGQTIQKILYTDPKVKCSAVTMDNELPTYIPEESSASTPRKKKYQCDKCKTIFDQISVFRQHMVGNHTNYHVAAKSRQYVCSKCDRKFSDQLKYNTHCEGHGDPDLECPICHKVYASKNNLKIHLKIHNRKYRCTDCTRSYDNAEVYKTHLKTHLKFVCQFEDCNFTANSESKRDDHYDEHIKNHVNNDPSNNDYGIEDQDTDSADNNHQSSDHADPYSSDQNNQTSSSFEEQLNFVYNDDIEEQFGIAETSSNTEIGESLLVDYIEDFQDDLTITECELKSESSDLLLGSDGTVSNDISTEDSSSSSSKDSEIIIVDGFEPGKDYNEKIGRYENEGEDNSNEKNENEEPDMNEKNENEEPDMNENATLEDINKEERIRTADSVIAKVVSDELFLPNTRMKNKYVRGNKTCLVCHKSFDRAGDLKRHLIEHVLKSTLTKLDRTDQGILQITCAICLKETFSTIDKYKAHLREHARLTLYKCTFCDKSFSDSSNFSKHKKIHGFAYFQCDMCRRKFNSKIMLSRHLELHEKSEPLECKHCQRLFPFESMLKKHLKSVHYKNSRSKFSCRFCPVSCKALKDKWDHEWEVHGIRKMIVDCLVCDAKFRKFSELKRHCSDEHHIDIPTQKELLARKTSKKVKVQRNDSEDCCLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -