Basic Information

Insect: Hypomecis punctinalis
Gene Symbol: -
Assembly: GCA_949316475.1
Location: OX438822.1:10538098-10540089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.005 0.55 12.2 0.2 1 23 74 96 74 96 0.94

2 15 0.044 4.8 9.2 1.3 2 23 101 122 100 122 0.93

3 15 0.32 35 6.5 0.2 3 23 162 182 160 182 0.96

4 15 0.62 67 5.6 0.6 2 23 209 231 208 231 0.94

5 15 0.091 9.9 8.2 1.2 1 23 252 276 252 276 0.96

6 15 0.0011 0.12 14.2 2.5 2 23 281 303 280 303 0.94

7 15 0.31 33 6.5 0.6 2 19 400 417 399 422 0.82

8 15 0.0072 0.78 11.7 0.7 1 23 443 465 443 465 0.98

9 15 0.00083 0.091 14.6 2.5 2 23 470 491 469 491 0.96

10 15 0.0071 0.78 11.7 4.7 1 23 497 520 497 520 0.96

11 15 0.0044 0.47 12.4 0.5 1 23 525 548 525 548 0.94

12 15 0.0051 0.55 12.1 0.8 1 23 554 577 554 577 0.96

13 15 0.056 6.1 8.9 5.1 3 23 585 605 584 605 0.97

14 15 2.3e-06 0.00025 22.6 0.8 1 23 611 633 611 633 0.99

15 15 1.4e-05 0.0015 20.2 2.7 1 23 639 661 639 662 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.005	0.55	12.2	0.2	1	23	74	96	74	96	0.94
2	15	0.044	4.8	9.2	1.3	2	23	101	122	100	122	0.93
3	15	0.32	35	6.5	0.2	3	23	162	182	160	182	0.96
4	15	0.62	67	5.6	0.6	2	23	209	231	208	231	0.94
5	15	0.091	9.9	8.2	1.2	1	23	252	276	252	276	0.96
6	15	0.0011	0.12	14.2	2.5	2	23	281	303	280	303	0.94
7	15	0.31	33	6.5	0.6	2	19	400	417	399	422	0.82
8	15	0.0072	0.78	11.7	0.7	1	23	443	465	443	465	0.98
9	15	0.00083	0.091	14.6	2.5	2	23	470	491	469	491	0.96
10	15	0.0071	0.78	11.7	4.7	1	23	497	520	497	520	0.96
11	15	0.0044	0.47	12.4	0.5	1	23	525	548	525	548	0.94
12	15	0.0051	0.55	12.1	0.8	1	23	554	577	554	577	0.96
13	15	0.056	6.1	8.9	5.1	3	23	585	605	584	605	0.97
14	15	2.3e-06	0.00025	22.6	0.8	1	23	611	633	611	633	0.99
15	15	1.4e-05	0.0015	20.2	2.7	1	23	639	661	639	662	0.95

Sequence Information

Coding Sequence: atgTCAAGCCACCCGCTGAAATTGGACAAACTCGATATACTTAAGAATTCTCGACCAGGTGATACTGTCAAATCTGACGTCGCGGATCTTAGATGCGACCTGTGCGAGCAAGATATCGACGATATACCGACACTAATGGACCATCTTTACGAGATTCACAATCAACCCATAGCTAAAAACTTTGACTCGGGTATCGTTCCTTACGTTTTAGCGAATGGATTTACCTGCGCACTATGCGGCAAAAGTTTCGATAGTTTTGCTATACTAAATGAGCATATGTTTGCCCACGCCCCGAAGTGCGCTTGTTTCGAATGTGGGAAAGAATTCGCCGTAGATAAACTTAAAAGGCATATTCTCCGAACACACGAAAATAATAAATTCCAGCCGAAACCAGGGGGCTATAAAGACGGTCGGCATAATGCTATTCTTATCTTCGAATTCTCTAACGCGTGTCCTTTCAAATGGCGAGGGAACGTTTTTGGTTGTGCTTACTGTACTTTCACTTCGCCCGAATttaccgatttaaaaatacacatGAGTGTTCACCCGATTAAGTCAgatagaattaaaatatttcgtaaTTCGCAATCAACCGATATTATGAAAGCCGATGTGACTGATTTAAAATGTGAATTGTGCCATCAGGATATTGAAAATCTTACGAAACTAATGATTCATCTCAAAGACGAGCACGACAAGCCTATCGTAAACGACTATGGCTATGGTATAATACCGTATAAGTTAAGAGATGGATTTAAATGCGCTTATAGTTTCTGCACCGAATCATTCGATTCTTTTCCCAAATTAAATATGCATGTGAAGTCGCACAATAAAAATTGTACGTGTGCACAATGTGACCAGTATTTCTCCGATAGTAAGAAGCTGGAAAAACATTTAATCAGGATGCACGACCATACTCATCTCACAAAACCTCGTTTGATGTACAATAAATCCGAATTACAATTGAAAAGCAAAAACTTACTGGGTGATGCCAGGTGTAACGCCAATATCATCTTGAAATTTTCTAACGCATGTCTGTTTAAGTGGCATCGAAATATGTTCGGATGTGGTAGTTGTAAATTTACTTCAGTGGAGTTCGGTCCGATCAGGGCTCATGTTGAAACCAAGAAATGTGACGGGATGTATATGCGCAATTTACGTTCCACGGCCGTATTGAAAGCTGACGTTACAAATCTGAAGTGTAAGCTCTGTGATCAGGTTTTTCATGATCTGAAAACATTACTTTTCCACCTAGGCGAGGTACACTTTAAACCAATTAAAAAAGAGTACGATCCTGGCCTCATTCCTTACTTGCTATGCGATGGCTACGTATGCGCTTTCTGTGGAGATCAATTCGATCGCTTCACAAAACTAAATAACCACATGAATGAGCACTTTCCGAATTGCATTTGCACATATTGTGGCCTAGCTTTCACGAGCGAAGTTCGATTGAAGACTCATACCAAGAAGCATACACAagaaacagtttttaaatgCTTGCAATGCAACGAGACTTTTGCAACAAGCCATCAGAAACGGAAACATAGAATATCCAAACATAATGAGTTTATATATAGATGTCCGTACTGCAACGAAGTGTTCATGAACTATCCGCTTAGAGTGAAGCATTTAAACGAGAAGCACGGCAAGAAGATAGAGTATCCGTGCAAACTGTGCTCAAAAGTATTCCAAACCGTTGCCAATCGTGCACATCATGTCAGAAATGTTCACGGGAAAGGCAAATTCGAACACTGTTCCATTTGTAACTACACGTGTTTGACCGCATACAAATTGAAAAGACATATGATAAGGCACGGTGGTGAGAGAAAGTACAAATGCGACGTCTGCTTCAAGGCCTACCCCAGAAAAAGCACACTGTCTCTGCACATGCGAATACACGACAGTGATAAGAGGTTTATCTGTGTGCACTGCGGTGCCGCGTTCGTGCAAAAATCTAGTCTGAATAGCCACACCAAGACTCATCATGcgtag
Protein Sequence: MSSHPLKLDKLDILKNSRPGDTVKSDVADLRCDLCEQDIDDIPTLMDHLYEIHNQPIAKNFDSGIVPYVLANGFTCALCGKSFDSFAILNEHMFAHAPKCACFECGKEFAVDKLKRHILRTHENNKFQPKPGGYKDGRHNAILIFEFSNACPFKWRGNVFGCAYCTFTSPEFTDLKIHMSVHPIKSDRIKIFRNSQSTDIMKADVTDLKCELCHQDIENLTKLMIHLKDEHDKPIVNDYGYGIIPYKLRDGFKCAYSFCTESFDSFPKLNMHVKSHNKNCTCAQCDQYFSDSKKLEKHLIRMHDHTHLTKPRLMYNKSELQLKSKNLLGDARCNANIILKFSNACLFKWHRNMFGCGSCKFTSVEFGPIRAHVETKKCDGMYMRNLRSTAVLKADVTNLKCKLCDQVFHDLKTLLFHLGEVHFKPIKKEYDPGLIPYLLCDGYVCAFCGDQFDRFTKLNNHMNEHFPNCICTYCGLAFTSEVRLKTHTKKHTQETVFKCLQCNETFATSHQKRKHRISKHNEFIYRCPYCNEVFMNYPLRVKHLNEKHGKKIEYPCKLCSKVFQTVANRAHHVRNVHGKGKFEHCSICNYTCLTAYKLKRHMIRHGGERKYKCDVCFKAYPRKSTLSLHMRIHDSDKRFICVHCGAAFVQKSSLNSHTKTHHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -