Hpun039283.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438820.1:12048270-12081383[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00072 0.079 14.8 1.1 1 23 397 419 397 419 0.98 2 10 3.4 3.7e+02 3.3 5.8 1 23 426 448 426 448 0.91 3 10 3.9e-05 0.0043 18.8 1.0 1 20 468 487 468 491 0.94 4 10 0.005 0.55 12.2 0.1 1 21 496 516 496 517 0.94 5 10 0.00026 0.028 16.2 1.3 2 23 536 558 535 558 0.96 6 10 3.1 3.3e+02 3.4 0.2 2 23 587 609 586 609 0.83 7 10 1.3e-05 0.0014 20.3 1.1 3 23 627 648 626 648 0.97 8 10 0.00036 0.039 15.8 1.4 1 23 653 675 653 675 0.91 9 10 1.9e-06 0.00021 22.9 1.8 1 23 680 702 680 702 0.97 10 10 9e-05 0.0098 17.7 0.4 1 23 708 731 708 731 0.96
Sequence Information
- Coding Sequence
- ATGCTCCACACGAAACTACCGCAGACGAACCTGGCCATGTGGACGCAGCAGAACAGCAAAGTGTACAACTTTACTTTCACAGAAAAGCGAGACCCTCCCATTGTGATCGCCAACATCAACCTAGATGATGACCCTCATGAAaaaaaagacAATAACGATGTGAAACCAAATACAATTGTGACGCCTAAAGTATCTGGAGTACTGCTGAACGAAAGTTTAAATGCTAACAATGCTAGGAAAGAGGATTATGTCCAATCAAATgacaaaattgataaagatgATGATGTAATTTGCCTGGAAGATAATGATGAACCCATAGATCTAACAGATGTAGATGAAGAAAATAACTACCCAGATGACGCAAGCCTGAATAGCAACGATGATTGTGACGATTATCTATTCACACCACCAAAAGCAAAATGCAAGGGAATGACTCTTGACCAATTGGCAGACATTGACTTAGTAGAAGAAGATTTAGCTGAAGACTTCGTATACAGCAAGGATACGATCAATTCTTCCAGTTTTCAAACTTCGCTAGAGAAATTAATAGCCGTGCAGATGGACATCGATTCTAAAATAGAAACGATTACTGCAAATTTAAATTCCATTTGTGAAAATTGGGAGGTtacatctttgacaaatttatATGCACCTGACGTACCAAAGGCAGATATTCGTGCATTCATTCGTAAATTTTTGACTGATGGAGAACTGGCAAATAAATTAAGACCCGGGCGGTCGCAACGATTGAAGAAAGTAAAGAACAAGGTGCCAAGCATGACGGAAAATTTGGATTTGATCAATGAGACATGTGAAAGAGTTATCAAAGATCATCTTGAAGGGCAGTTGGAACCTAAGGAAAGATTGAAAGCAGAGTTGTCTCGTCGAGTGGAAAGGTGGGGAGAGCTGAAATCCAACAGCGGCCACGTGTTCGACTTTGATGTCATCGTCAACTCCCTCGATTTGACCCCTAGAGGTGTTATCAACCGTTTGCTCAACTTTTTACGTGCCAATCGGGAATCAAAAAGTCTTATACCTGGCATCACTCAATCACTCCGACTGATCGAGAGTAAGCAAAATCTAGAGAAATACAAGTCTGTATTCGATATAGAGTACATGACGACAGAGAAAGCAGCCGTAGAGGAGTTCGAAAGACGTAAAACGTACGAGTGCTACGTTAATACAGAGTTTAAGTGCGACATCTGTTACCAAGGATTCAAGAATGCCGGCATGCTGGAATATCATAAGAAATATCATGCTGAAAACGCAGGTCCATTCGCGTGTCACATATGCAAGATGAATTTCGCGTCGAAAAGGAAACGCCATACTCATAACACTTCGCACCTGGTGGTCTACAGTGAATCAATGCGCAACCATTACGAGCAACACAAGGGCACTGAATTCAAATGCGATAAATGCGGCAAGACGTACAAGAGTAAATCCGTGCTAAACGCCCACCGCTGGCGCGCTCACTCAAGCGGGACTCACGTGTGCACGCTCTGTGGAGGCACCTTCATATCTGCAGCCGGACTGCGGACGCATAGAAACAAGACAAACTGTGGCGCGAGTAAACCGGATGTCGGGGCTTCATCCGGCGACGAAGTGAAGTGCGAGATATGTGACGTGACGTTTGCGACGTCGCGCGCCTTCCACAAACATCAGTTGAAGCTACACCGAGAGCTGCTCGCAGACCGCGCCCGGTGTTCCCGAGTAACTAACCCGCATAGAAAACGAGCGATGAGAAAAAAACCGAACATGGTTTGCAAAGTGTGCAACAAAGTGGGCCACAGCTACGGGTGGATGGTTATGCATTACAGTTTAGCGCACCCCACCCACGACGTGACGCGCGACAACTATGGAGACCGACTTAGTAACCTCTGTGACGTCTGCGGCAAGAGATTCATGaaCAAATACACACTAAAGAACCACATACAAATGCGCCATATGGGCGTAACGTACCCGTGCCCCCAGTGCGGGAAACGTTACCGTTCCAAGATGGCGCTCCACCAACACAGCGCCTTCCACGGGCCGAGAAAATTCGCCTGCGATATGTGTAACAAGAAATTCCGATCGGCTTCCAATCTTTCTAATCATAAGCGGagtCACATCAGAAACCGTccctacaaatgtaaaatttgCGGCAAAGGCTTCATGTTCCGAAGTACAGTTACTGAGCACATCCAAGGCGTCCACAACCACGAGCGTCGCATTCGGAAACGGCTATCGAAACGGTCGAGAAGTATTGATGGCACGCTGGATCTTTCTGAGACAAGTAACGGAGTGACTAACGAATTTGACGAAGAACCAGTGTTTCTAGAATTGGGAACGGAATTGGAAGTCGCAAGCGAGGTTTTAATTGAACCGGAATAG
- Protein Sequence
- MLHTKLPQTNLAMWTQQNSKVYNFTFTEKRDPPIVIANINLDDDPHEKKDNNDVKPNTIVTPKVSGVLLNESLNANNARKEDYVQSNDKIDKDDDVICLEDNDEPIDLTDVDEENNYPDDASLNSNDDCDDYLFTPPKAKCKGMTLDQLADIDLVEEDLAEDFVYSKDTINSSSFQTSLEKLIAVQMDIDSKIETITANLNSICENWEVTSLTNLYAPDVPKADIRAFIRKFLTDGELANKLRPGRSQRLKKVKNKVPSMTENLDLINETCERVIKDHLEGQLEPKERLKAELSRRVERWGELKSNSGHVFDFDVIVNSLDLTPRGVINRLLNFLRANRESKSLIPGITQSLRLIESKQNLEKYKSVFDIEYMTTEKAAVEEFERRKTYECYVNTEFKCDICYQGFKNAGMLEYHKKYHAENAGPFACHICKMNFASKRKRHTHNTSHLVVYSESMRNHYEQHKGTEFKCDKCGKTYKSKSVLNAHRWRAHSSGTHVCTLCGGTFISAAGLRTHRNKTNCGASKPDVGASSGDEVKCEICDVTFATSRAFHKHQLKLHRELLADRARCSRVTNPHRKRAMRKKPNMVCKVCNKVGHSYGWMVMHYSLAHPTHDVTRDNYGDRLSNLCDVCGKRFMNKYTLKNHIQMRHMGVTYPCPQCGKRYRSKMALHQHSAFHGPRKFACDMCNKKFRSASNLSNHKRSHIRNRPYKCKICGKGFMFRSTVTEHIQGVHNHERRIRKRLSKRSRSIDGTLDLSETSNGVTNEFDEEPVFLELGTELEVASEVLIEPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -