Basic Information

Insect: Hypomecis punctinalis
Gene Symbol: -
Assembly: GCA_949316475.1
Location: OX438822.1:10465150-10467594[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.041 4.5 9.3 4.8 3 23 27 48 24 49 0.88

2 15 1e-05 0.0011 20.6 1.4 1 23 147 170 147 170 0.94

3 15 0.44 48 6.1 0.2 3 20 178 195 178 197 0.94

4 15 0.034 3.7 9.5 1.3 1 23 204 227 204 227 0.88

5 15 0.087 9.5 8.3 0.2 1 11 233 243 233 246 0.92

6 15 0.00087 0.094 14.6 2.6 3 22 279 299 275 302 0.87

7 15 0.011 1.2 11.1 0.2 2 23 328 350 327 350 0.96

8 15 0.088 9.6 8.2 0.7 5 23 376 394 373 394 0.93

9 15 2e-06 0.00021 22.9 1.3 2 23 399 421 399 421 0.94

10 15 0.26 29 6.8 0.2 3 20 428 445 428 447 0.94

11 15 0.02 2.1 10.3 0.2 1 23 454 477 454 477 0.95

12 15 0.001 0.11 14.3 0.2 1 23 483 506 483 506 0.90

13 15 0.0038 0.41 12.5 4.3 1 23 510 532 510 532 0.94

14 15 1.2e-05 0.0014 20.4 1.2 1 20 538 557 538 560 0.94

15 15 1.8e-05 0.002 19.8 1.9 1 23 566 589 566 589 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.041	4.5	9.3	4.8	3	23	27	48	24	49	0.88
2	15	1e-05	0.0011	20.6	1.4	1	23	147	170	147	170	0.94
3	15	0.44	48	6.1	0.2	3	20	178	195	178	197	0.94
4	15	0.034	3.7	9.5	1.3	1	23	204	227	204	227	0.88
5	15	0.087	9.5	8.3	0.2	1	11	233	243	233	246	0.92
6	15	0.00087	0.094	14.6	2.6	3	22	279	299	275	302	0.87
7	15	0.011	1.2	11.1	0.2	2	23	328	350	327	350	0.96
8	15	0.088	9.6	8.2	0.7	5	23	376	394	373	394	0.93
9	15	2e-06	0.00021	22.9	1.3	2	23	399	421	399	421	0.94
10	15	0.26	29	6.8	0.2	3	20	428	445	428	447	0.94
11	15	0.02	2.1	10.3	0.2	1	23	454	477	454	477	0.95
12	15	0.001	0.11	14.3	0.2	1	23	483	506	483	506	0.90
13	15	0.0038	0.41	12.5	4.3	1	23	510	532	510	532	0.94
14	15	1.2e-05	0.0014	20.4	1.2	1	20	538	557	538	560	0.94
15	15	1.8e-05	0.002	19.8	1.9	1	23	566	589	566	589	0.97

Sequence Information

Coding Sequence: ATGGCGCGGCAAAACGCAGTGTTATTAATGCAGCACACAACGGCTTATCCGTTCCGACTGCCAGGGGACCACATGTGTTGCTTCATTTGTCGCAAAGAGTATAAAACTCCAGAAGAGTTTAGAGAGCACATGGTCCAGGACCATCATAGGTCTTATCATATGATTATGAAGAGCTCGCGTCTCCTTCATCAATCAGCCACATTCAAACTCGATATAACAGAAATGCAATGTCGTATTTGTTCCACTCCGTCTGATAGTATTGAAAAGATCGCCGAACATCTGTCGAAAGCCCACCGCGTCCCCGGCCTCAACTTATCTTACGATTTAGGCGTTAATCCATTTAAAATACACAATGGTGTTTATAACTGCATTGTTTGCTCGGCAAAGTCTGTCTCGCTACGCGCTCTAAGCAGGCATAGTATGATCCATTACGTGAATCACACTTGCGAGGTATGTGGAAAGTCGTACGCGAACCCCGAAACGCTCAAAAAGCACAAAAAGTTTGCTCACATCGGCCCCAATAAAACTTGGTGCCGCAAATGTCAGAAAATATTTGATTCTTTAGAAGAAAAGCAAAAGCATGTTGCCGAATCGAAGGATTGTTGGGTGTATACGTGTCACGTTTGTGGAGAGAGGTTCCCGTTGCAAACTGTTAAAGAAAAGCATTTCCGAGATGTTCATAACTTAGTAGGCGGCTATGCTTGTCCGGAGTGTCCAAAAGTGTTTACGGCTGTACACAAACAGCTATCTTCTAATGTCATCGCGCGGAATAACGCCGCAATCTTAGTGCAGAATACGACGGCTTTTGCTTTCCGTCTGCCGTGCGATGACATTTGTTGTATCATCTGCGACAAGGAGTTTAAAAACCCGGAAGAGTTTAGGCACCACATGATGCTGGACGACCATAAGTCTCCTCACAAGATATTGCGTTTTTTACGTCCTTCGCGTCCTATTACTCTCAAAATTGATGTTACAGATTTACGCTGCCGCGTTTGCGGCGTCACTTTCGATAGATTAGAAAAAATAGCCACGCATTTATCAACCGAACATAGCTTAAACATAGACACTTCCCACGATTTGGGTGTACAGCCCTTTATAATGCACAAAGGTGTCAATTCTTGTATATTTTGCTCGGAAAAGTTTGTCACACTACGCGCTCTGAGCAGACACACTCAGGTACATTATTTGAATAACACGTGCGAGACCTGCGGAAAGTCATTCTCAACATCTAGCTCCCTCAAAGTGCACGTAAAGTTCTCGCACCTTGACTCCAAAACttggtgccaaaaatgtaagACGGTATTCGATAGTCCagaagaaaaacaaaatcatGTAACCGAATCGAAGAAGTGTTGGCAGTATTCGTGCAATATTTGCGGGGAAAAGTTGATGTCGCAAAGTCTCAAAGCGAAGCATGCTCAAATTAAACACAATATTTCGAGCCACTACCCATGTCCAGAATGTCCAGAAGTTTTCACGAACAGAACCAAGCGACGTAATCATTTTCTTGCAGCTCatacaaataaattcaaatgtTCCTGTTGTGATAAGACGTTTTCAACTAATTACTATCTGGTCAATCACTCTGTCATGCATTCTTCTGAAAAGAAGTTTCAATGCAGTGTGTGTTTGAAAGAGTTTAGCAGAAAGAAGAATTTGAAGCAACATATGCCGATTCATATGAAGGATAAACCTTACAAGTGCGATATTTGCAATAAGCAATTCAATCAACGTGTCAGTTGGAAAACTCATATGTCGTCCTACCATCCTGAGCTAAAAACTTGGTAA
Protein Sequence: MARQNAVLLMQHTTAYPFRLPGDHMCCFICRKEYKTPEEFREHMVQDHHRSYHMIMKSSRLLHQSATFKLDITEMQCRICSTPSDSIEKIAEHLSKAHRVPGLNLSYDLGVNPFKIHNGVYNCIVCSAKSVSLRALSRHSMIHYVNHTCEVCGKSYANPETLKKHKKFAHIGPNKTWCRKCQKIFDSLEEKQKHVAESKDCWVYTCHVCGERFPLQTVKEKHFRDVHNLVGGYACPECPKVFTAVHKQLSSNVIARNNAAILVQNTTAFAFRLPCDDICCIICDKEFKNPEEFRHHMMLDDHKSPHKILRFLRPSRPITLKIDVTDLRCRVCGVTFDRLEKIATHLSTEHSLNIDTSHDLGVQPFIMHKGVNSCIFCSEKFVTLRALSRHTQVHYLNNTCETCGKSFSTSSSLKVHVKFSHLDSKTWCQKCKTVFDSPEEKQNHVTESKKCWQYSCNICGEKLMSQSLKAKHAQIKHNISSHYPCPECPEVFTNRTKRRNHFLAAHTNKFKCSCCDKTFSTNYYLVNHSVMHSSEKKFQCSVCLKEFSRKKNLKQHMPIHMKDKPYKCDICNKQFNQRVSWKTHMSSYHPELKTW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -